Showing 8 of total 8 results (show query)
r-forge
Matrix:Sparse and Dense Matrix Classes and Methods
A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.
Maintained by Martin Maechler. Last updated 20 days ago.
1 stars 17.23 score 33k scripts 12k dependents
bioc
TFBSTools:Software Package for Transcription Factor Binding Site (TFBS) Analysis
TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.
Maintained by Ge Tan. Last updated 17 days ago.
motifannotationgeneregulationmotifdiscoverytranscriptionalignment
28 stars 12.36 score 1.1k scripts 18 dependents
moodymudskipper
typed:Support Types for Variables, Arguments, and Return Values
A type system for R. It supports setting variable types in a script or the body of a function, so variables can't be assigned illegal values. Moreover it supports setting argument and return types for functions.
Maintained by Antoine Fabri. Last updated 3 months ago.
169 stars 8.65 score 18 scripts 1 dependents
symengine
symengine:Interface to the 'SymEngine' Library
Provides an R interface to 'SymEngine' <https://github.com/symengine/>, a standalone 'C++' library for fast symbolic manipulation. The package has functionalities for symbolic computation like calculating exact mathematical expressions, solving systems of linear equations and code generation.
Maintained by Jialin Ma. Last updated 1 years ago.
26 stars 8.20 score 33 scripts 10 dependents
darunabas
phyloregion:Biogeographic Regionalization and Macroecology
Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>. It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>. The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).
Maintained by Barnabas H. Daru. Last updated 5 months ago.
18 stars 7.21 score 50 scripts 1 dependents
matthewheun
matsbyname:An Implementation of Matrix Mathematics that Respects Row and Column Names
An implementation of matrix mathematics wherein operations are performed "by name."
Maintained by Matthew Heun. Last updated 23 days ago.
2 stars 6.65 score 150 scripts 1 dependentsbioc
gpuMagic:An openCL compiler with the capacity to compile R functions and run the code on GPU
The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.
Maintained by Jiefei Wang. Last updated 5 months ago.
10 stars 5.60 score 1 scripts
