Showing 19 of total 19 results (show query)
ropensci
EML:Read and Write Ecological Metadata Language Files
Work with Ecological Metadata Language ('EML') files. 'EML' is a widely used metadata standard in the ecological and environmental sciences, described in Jones et al. (2006), <doi:10.1146/annurev.ecolsys.37.091305.110031>.
Maintained by Carl Boettiger. Last updated 3 years ago.
emleml-metadatametadata-standard
92.2 match 97 stars 11.19 score 378 scripts 7 dependentsropensci
dataspice:Create Lightweight Schema.org Descriptions of Data
The goal of 'dataspice' is to make it easier for researchers to create basic, lightweight, and concise metadata files for their datasets. These basic files can then be used to make useful information available during analysis, create a helpful dataset "README" webpage, and produce more complex metadata formats to aid dataset discovery. Metadata fields are based on the 'Schema.org' and 'Ecological Metadata Language' standards.
Maintained by Bryce Mecum. Last updated 4 years ago.
datadatasetmetadataschema-orgunconfunconf18
15.3 match 162 stars 7.45 score 25 scriptsropensci
emld:Ecological Metadata as Linked Data
This is a utility for transforming Ecological Metadata Language ('EML') files into 'JSON-LD' and back into 'EML.' Doing so creates a list-based representation of 'EML' in R, so that 'EML' data can easily be manipulated using standard 'R' tools. This makes this package an effective backend for other 'R'-based tools working with 'EML.' By abstracting away the complexity of 'XML' Schema, developers can build around native 'R' list objects and not have to worry about satisfying many of the additional constraints of set by the schema (such as element ordering, which is handled automatically). Additionally, the 'JSON-LD' representation enables the use of developer-friendly 'JSON' parsing and serialization that may facilitate the use of 'EML' in contexts outside of 'R,' as well as the informatics-friendly serializations such as 'RDF' and 'SPARQL' queries.
Maintained by Carl Boettiger. Last updated 4 years ago.
14.2 match 13 stars 7.63 score 69 scripts 8 dependentsropensci
EDIutils:An API Client for the Environmental Data Initiative Repository
A client for the Environmental Data Initiative repository REST API. The 'EDI' data repository <https://portal.edirepository.org/nis/home.jsp> is for publication and reuse of ecological data with emphasis on metadata accuracy and completeness. It is built upon the 'PASTA+' software stack <https://pastaplus-core.readthedocs.io/en/latest/index.html#> and was developed in collaboration with the US 'LTER' Network <https://lternet.edu/>. 'EDIutils' includes functions to search and access existing data, evaluate and upload new data, and assist other data management tasks common to repository users.
Maintained by Colin Smith. Last updated 1 years ago.
ecologyeml-metadataopen-accessopen-dataresearch-data-managementresearch-data-repository
7.5 match 10 stars 6.47 score 117 scripts
r-forge
copula:Multivariate Dependence with Copulas
Classes (S4) of commonly used elliptical, Archimedean, extreme-value and other copula families, as well as their rotations, mixtures and asymmetrizations. Nested Archimedean copulas, related tools and special functions. Methods for density, distribution, random number generation, bivariate dependence measures, Rosenblatt transform, Kendall distribution function, perspective and contour plots. Fitting of copula models with potentially partly fixed parameters, including standard errors. Serial independence tests, copula specification tests (independence, exchangeability, radial symmetry, extreme-value dependence, goodness-of-fit) and model selection based on cross-validation. Empirical copula, smoothed versions, and non-parametric estimators of the Pickands dependence function.
Maintained by Martin Maechler. Last updated 11 days ago.
3.0 match 11.83 score 1.2k scripts 86 dependents
inbo
movepub:Prepare Movebank Data for Publication
Prepare animal tracking data from 'Movebank' (<https://movebank.org>) for publication in a research repository. With 'movepub' you can document data with metadata following the Data Package standard and transform these to Darwin Core and Ecological Metadata Language ('EML') for publication to the Global Biodiversity Information Facility ('GBIF') and the Ocean Biodiversity Information System ('OBIS').
Maintained by Peter Desmet. Last updated 3 days ago.
5.4 match 3 stars 4.65 score 5 scripts
dataoneorg
dataone:R Interface to the DataONE REST API
Provides read and write access to data and metadata from the DataONE network <https://www.dataone.org> of data repositories. Each DataONE repository implements a consistent repository application programming interface. Users call methods in R to access these remote repository functions, such as methods to query the metadata catalog, get access to metadata for particular data packages, and read the data objects from the data repository. Users can also insert and update data objects on repositories that support these methods.
Maintained by Matthew B. Jones. Last updated 3 years ago.
1.9 match 36 stars 9.93 score 472 scripts 3 dependents
ediorg
ecocomDP:Tools to Create, Use, and Convert ecocomDP Data
Work with the Ecological Community Data Design Pattern. 'ecocomDP' is a flexible data model for harmonizing ecological community surveys, in a research question agnostic format, from source data published across repositories, and with methods that keep the derived data up-to-date as the underlying sources change. Described in O'Brien et al. (2021), <doi:10.1016/j.ecoinf.2021.101374>.
Maintained by Colin Smith. Last updated 7 months ago.
2.0 match 32 stars 8.22 score 77 scriptsinbo
camtraptor:Read, Explore and Visualize Camera Trap Data Packages
Read, explore and visualize Camera Trap Data Packages (Camtrap DP). 'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a community developed data exchange format for this type of data. With camtraptor you can read and filter data, create overviews of observed species, relative abundance or effort, and plot these data on a map.
Maintained by Damiano Oldoni. Last updated 27 days ago.
1.8 match 12 stars 6.27 score 16 scripts
nceas
metajam:Easily Download Data and Metadata from 'DataONE'
A set of tools to foster the development of reproducible analytical workflow by simplifying the download of data and metadata from 'DataONE' (<https://www.dataone.org>) and easily importing this information into R.
Maintained by Julien Brun. Last updated 7 months ago.
datadata-analysismetadatarepositories
1.3 match 16 stars 8.21 score 75 scripts
amoeba
eatocsv:Download and extract Entity-Attribute metadata into a CSV
Downloads and extracts Entity-Attribute metadata from EML documents stored in a DataONE Member Node
Maintained by Bryce Mecum. Last updated 4 years ago.
5.8 match 1.70 score 5 scriptsinbo
camtrapdp:Read and Manipulate Camera Trap Data Packages
Read and manipulate Camera Trap Data Packages ('Camtrap DP'). 'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a data exchange format for camera trap data. With 'camtrapdp' you can read, filter and transform data (including to Darwin Core) before further analysis in e.g. 'camtraptor' or 'camtrapR'.
Maintained by Peter Desmet. Last updated 9 days ago.
1.8 match 7 stars 5.67 score 12 scripts
jbdorey
BeeBDC:Occurrence Data Cleaning
Flags and checks occurrence data that are in Darwin Core format. The package includes generic functions and data as well as some that are specific to bees. This package is meant to build upon and be complimentary to other excellent occurrence cleaning packages, including 'bdc' and 'CoordinateCleaner'. This package uses datasets from several sources and particularly from the Discover Life Website, created by Ascher and Pickering (2020). For further information, please see the original publication and package website. Publication - Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Maintained by James B. Dorey. Last updated 4 months ago.
1.7 match 3 stars 5.68 score 7 scripts
miferreiro
bdpar:Big Data Preprocessing Architecture
Provide a tool to easily build customized data flows to pre-process large volumes of information from different sources. To this end, 'bdpar' allows to (i) easily use and create new functionalities and (ii) develop new data source extractors according to the user needs. Additionally, the package provides by default a predefined data flow to extract and pre-process the most relevant information (tokens, dates, ... ) from some textual sources (SMS, Email, YouTube comments).
Maintained by Miguel Ferreiro-Díaz. Last updated 1 years ago.
custom-flowcustom-pipespreprocessingr6
1.8 match 8 stars 5.23 score 14 scripts
dutangc
gumbel:The Gumbel-Hougaard Copula
Provides probability functions (cumulative distribution and density functions), simulation function (Gumbel copula multivariate simulation) and estimation functions (Maximum Likelihood Estimation, Inference For Margins, Moment Based Estimation and Canonical Maximum Likelihood).
Maintained by Christophe Dutang. Last updated 5 months ago.
2.3 match 3.29 score 13 scripts 1 dependents
luomus
f2g:FinBIF to GBIF
Tools for publishing FinBIF data to GBIF.
Maintained by William K. Morris. Last updated 9 days ago.
2.3 match 1 stars 3.02 score
uzh-peg
dmdScheme:Domain Specific MetaData Scheme
Forms the core for developing own domain specific metadata schemes. It contains the basic functionality needed for all metadata schemes based on the 'dmdScheme'. See R.M. Krug and O.L. Petchey (2019) <DOI:10.5281/zenodo.3581970>.
Maintained by Rainer M. Krug. Last updated 3 years ago.
1.7 match 2 stars 2.78 score 15 scripts
kurthornik
tm.plugin.mail:Text Mining E-Mail Plug-in
A plug-in for the tm text mining framework providing mail handling functionality.
Maintained by Kurt Hornik. Last updated 6 months ago.
1.7 match 1.72 score 26 scripts
