Showing 40 of total 40 results (show query)

joshuaulrich

quantmod:Quantitative Financial Modelling Framework

Specify, build, trade, and analyse quantitative financial trading strategies.

Maintained by Joshua M. Ulrich. Last updated 15 days ago.

algorithmic-tradingchartingdata-importfinancetime-series

3.3 match 839 stars 16.17 score 8.1k scripts 343 dependents

rkabacoff

qacBase:Functions to Facilitate Exploratory Data Analysis

Functions for descriptive statistics, data management, and data visualization.

Maintained by Kabacoff Robert. Last updated 3 years ago.

edastatistics

6.0 match 1 stars 5.13 score 45 scripts

bioc

geneXtendeR:Optimized Functional Annotation Of ChIP-seq Data

geneXtendeR optimizes the functional annotation of ChIP-seq peaks by exploring relative differences in annotating ChIP-seq peak sets to variable-length gene bodies. In contrast to prior techniques, geneXtendeR considers peak annotations beyond just the closest gene, allowing users to see peak summary statistics for the first-closest gene, second-closest gene, ..., n-closest gene whilst ranking the output according to biologically relevant events and iteratively comparing the fidelity of peak-to-gene overlap across a user-defined range of upstream and downstream extensions on the original boundaries of each gene's coordinates. Since different ChIP-seq peak callers produce different differentially enriched peaks with a large variance in peak length distribution and total peak count, annotating peak lists with their nearest genes can often be a noisy process. As such, the goal of geneXtendeR is to robustly link differentially enriched peaks with their respective genes, thereby aiding experimental follow-up and validation in designing primers for a set of prospective gene candidates during qPCR.

Maintained by Bohdan Khomtchouk. Last updated 5 months ago.

chipseqgeneticsannotationgenomeannotationdifferentialpeakcallingcoveragepeakdetectionchiponchiphistonemodificationdataimportnaturallanguageprocessingvisualizationgosoftwarebioconductorbioinformaticscchip-seqcomputational-biologyepigeneticsfunctional-annotation

3.3 match 9 stars 3.95 score 5 scripts

mrc-ide

hintr:R API for calling naomi district level HIV model

R API for calling naomi district level HIV model.

Maintained by Robert Ashton. Last updated 6 days ago.

2.2 match 2 stars 5.80 score 2 scripts 1 dependents

cran

tree:Classification and Regression Trees

Classification and regression trees.

Maintained by Brian Ripley. Last updated 3 months ago.

1.8 match 1 stars 4.76 score 13 dependents