Showing 123 of total 123 results (show query)
mclements
ascii:Export R Objects to Several Markup Languages
Coerce R object to 'asciidoc', 'txt2tags', 'restructuredText', 'org', 'textile' or 'pandoc' syntax. Package comes with a set of drivers for 'Sweave'.
Maintained by Mark Clements. Last updated 1 years ago.
74.1 match 8 stars 5.31 score 161 scripts 2 dependents
henrikbengtsson
R.oo:R Object-Oriented Programming with or without References
Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
Maintained by Henrik Bengtsson. Last updated 5 months ago.
28.8 match 20 stars 11.49 score 329 scripts 828 dependents
dfsp-spirit
freesurferformats:Read and Write 'FreeSurfer' Neuroimaging File Formats
Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' <http://freesurfer.net/> formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.
Maintained by Tim Schรคfer. Last updated 6 months ago.
brainbrain-atlasbrain-surfacescurvdtifileformatsfreesurferlabelmeshmghmrineuroimagingparcellationresearchsurfacevoxel
27.3 match 23 stars 8.07 score 25 scripts 8 dependents
r-spatial
RSAGA:SAGA Geoprocessing and Terrain Analysis
Provides access to geocomputing and terrain analysis functions of the geographical information system (GIS) 'SAGA' (System for Automated Geoscientific Analyses) from within R by running the command line version of SAGA. This package furthermore provides several R functions for handling ASCII grids, including a flexible framework for applying local functions (including predict methods of fitted models) and focal functions to multiple grids. SAGA GIS is available under GPL-2 / LGPL-2 licences from <https://sourceforge.net/projects/saga-gis/>.
Maintained by Alexander Brenning. Last updated 1 months ago.
19.3 match 23 stars 8.72 score 275 scripts
jacobkap
asciiSetupReader:Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have Accompanying Setup Files (.sps or .sas)
Lets you open a fixed-width ASCII file (.txt or .dat) that has an accompanying setup file (.sps or .sas). These file combinations are sometimes referred to as .txt+.sps, .txt+.sas, .dat+.sps, or .dat+.sas. This will only run in a txt-sps or txt-sas pair in which the setup file contains instructions to open that text file. It will NOT open other text files, .sav, .sas, or .por data files. Fixed-width ASCII files with setup files are common in older (pre-2000) government data.
Maintained by Jacob Kaplan. Last updated 7 months ago.
asciidatdata-readerfixed-widthfixed-width-parserfixed-width-tablesfixed-width-textsasspss
19.5 match 11 stars 6.34 score 22 scripts 1 dependents
sckott
cowsay:Messages, Warnings, Strings with Ascii Animals
Allows printing of character strings as messages/warnings/etc. with ASCII animals, including cats, cows, frogs, chickens, ghosts, and more.
Maintained by Scott Chamberlain. Last updated 2 months ago.
11.0 match 320 stars 10.23 score 239 scripts
gagolews
stringi:Fast and Portable Character String Processing Facilities
A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at <https://stringi.gagolewski.com/> and the paper by Gagolewski (2022, <doi:10.18637/jss.v103.i02>).
Maintained by Marek Gagolewski. Last updated 1 months ago.
icuicu4cnatural-language-processingnlpregexregexpstring-manipulationstringistringrtexttext-processingtidy-dataunicodecpp
4.0 match 309 stars 18.31 score 10k scripts 8.6k dependents
petulla
readroper:Simply Read ASCII Single and Multicard Polling Datasets
A convenient way to read fixed-width ASCII polling datasets from providers like the Roper Center <https://ropercenter.cornell.edu>.
Maintained by Sam Petulla. Last updated 5 years ago.
asciidata-analysispolling-data
17.2 match 3 stars 4.18 score 3 scripts
blmayer
asciichartr:Lightweight ASCII Line Graphs
Create ASCII line graphs of a time series directly on your terminal in an easy way. There are some configurations you can add to make the plot the way you like. This project was inspired by the original 'asciichart' package by Igor Kroitor.
Maintained by Brian. Last updated 5 years ago.
17.5 match 7 stars 3.54 score
insightsengineering
formatters:ASCII Formatting for Values and Tables
We provide a framework for rendering complex tables to ASCII, and a set of formatters for transforming values or sets of values into ASCII-ready display strings.
Maintained by Joe Zhu. Last updated 2 months ago.
5.6 match 17 stars 10.19 score 22 scripts 20 dependents
r-lib
asciicast:Create 'Ascii' Screen Casts from R Scripts
Record 'asciicast' screen casts from R scripts. Convert them to animated SVG images, to be used in 'README' files, or blog posts. Includes 'asciinema-player' as an 'HTML' widget, and an 'asciicast' 'knitr' engine, to embed 'ascii' screen casts in 'Rmarkdown' documents.
Maintained by Gรกbor Csรกrdi. Last updated 5 months ago.
8.9 match 232 stars 6.34 score 8 scripts
ecor
geotopbricks:An R Plug-in for the Distributed Hydrological Model GEOtop
It analyzes raster maps and other information as input/output files from the Hydrological Distributed Model GEOtop. It contains functions and methods to import maps and other keywords from geotop.inpts file. Some examples with simulation cases of GEOtop 2.x/3.x are presented in the package. Any information about the GEOtop Distributed Hydrological Model source code is available on www.geotop.org. Technical details about the model are available in Endrizzi et al (2014) <https://gmd.copernicus.org/articles/7/2831/2014/gmd-7-2831-2014.html>.
Maintained by Emanuele Cordano. Last updated 2 months ago.
10.3 match 4 stars 4.83 score 112 scripts
oscarkjell
text:Analyses of Text using Transformers Models from HuggingFace, Natural Language Processing and Machine Learning
Link R with Transformers from Hugging Face to transform text variables to word embeddings; where the word embeddings are used to statistically test the mean difference between set of texts, compute semantic similarity scores between texts, predict numerical variables, and visual statistically significant words according to various dimensions etc. For more information see <https://www.r-text.org>.
Maintained by Oscar Kjell. Last updated 4 days ago.
deep-learningmachine-learningnlptransformersopenjdk
3.8 match 146 stars 13.16 score 436 scripts 1 dependents
opengeos
whitebox:'WhiteboxTools' R Frontend
An R frontend for the 'WhiteboxTools' library, which is an advanced geospatial data analysis platform developed by Prof. John Lindsay at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. 'WhiteboxTools' can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image enhancement (e.g. panchromatic sharpening, contrast adjustments), image mosaicing, numerous filtering operations, simple classification (k-means), and common image transformations. 'WhiteboxTools' also contains advanced tooling for spatial hydrological analysis (e.g. flow-accumulation, watershed delineation, stream network analysis, sink removal), terrain analysis (e.g. common terrain indices such as slope, curvatures, wetness index, hillshading; hypsometric analysis; multi-scale topographic position analysis), and LiDAR data processing. Suggested citation: Lindsay (2016) <doi:10.1016/j.cageo.2016.07.003>.
Maintained by Andrew Brown. Last updated 5 months ago.
geomorphometrygeoprocessinggeospatialgishydrologyremote-sensingrstudio
4.5 match 173 stars 9.65 score 203 scripts 2 dependents
kwb-r
kwb.utils:General Utility Functions Developed at KWB
This package contains some small helper functions that aim at improving the quality of code developed at Kompetenzzentrum Wasser gGmbH (KWB).
Maintained by Hauke Sonnenberg. Last updated 12 months ago.
5.4 match 8 stars 7.33 score 12 scripts 78 dependents
djnavarro
asciify:Make ASCII Art From Images
Takes an arbitrary image as input and constructs an text-based approximation to the image using the imager package.
Maintained by Danielle Navarro. Last updated 5 years ago.
12.3 match 34 stars 3.23 score 1 scripts
ethanbass
chromConverter:Chromatographic File Converter
Reads chromatograms from binary formats into R objects. Currently supports conversion of 'Agilent ChemStation', 'Agilent MassHunter', 'Shimadzu LabSolutions', 'ThermoRaw', and 'Varian Workstation' files as well as various text-based formats. In addition to its internal parsers, chromConverter contains bindings to parsers in external libraries, such as 'Aston' <https://github.com/bovee/aston>, 'Entab' <https://github.com/bovee/entab>, 'rainbow' <https://rainbow-api.readthedocs.io/>, and 'ThermoRawFileParser' <https://github.com/compomics/ThermoRawFileParser>.
Maintained by Ethan Bass. Last updated 10 days ago.
cheminformaticschromatographyfair-datagc-fidhplchplc-dadhplc-uvmetabolomicsmetabolomics-dataopen-dataopen-science
5.8 match 33 stars 6.35 score 16 scripts 2 dependents
patperry
utf8:Unicode Text Processing
Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.
Maintained by Kirill Mรผller. Last updated 3 months ago.
2.2 match 113 stars 16.48 score 295 scripts 11k dependents
ajdamico
SAScii:Import ASCII Files Directly into R using Only a 'SAS' Input Script
Using any importation code designed for 'SAS' users to read ASCII files into 'sas7bdat' files, this package parses through the INPUT block of a '.sas' syntax file to design the parameters needed for a 'read.fwf()' function call. This allows the user to specify the location of the ASCII (often a '.dat') file and the location of the 'SAS' syntax file, and then load the data frame directly into R in just one step.
Maintained by Anthony Joseph Damico. Last updated 2 years ago.
6.9 match 21 stars 5.19 score 248 scripts 1 dependents
tidyverse
tidyverse:Easily Install and Load the 'Tidyverse'
The 'tidyverse' is a set of packages that work in harmony because they share common data representations and 'API' design. This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step. Learn more about the 'tidyverse' at <https://www.tidyverse.org>.
Maintained by Hadley Wickham. Last updated 5 months ago.
1.8 match 1.7k stars 20.26 score 664k scripts 125 dependents
jonathanlees
RSEIS:Seismic Time Series Analysis Tools
Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Maintained by Jonathan M. Lees. Last updated 6 months ago.
7.8 match 3 stars 4.27 score 262 scripts 4 dependents
yihui
xfun:Supporting Functions for Packages Maintained by 'Yihui Xie'
Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Maintained by Yihui Xie. Last updated 3 days ago.
1.7 match 145 stars 18.18 score 916 scripts 4.4k dependents
martin3141
spant:MR Spectroscopy Analysis Tools
Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data. The package includes methods for spectral fitting: Wilson (2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018) <DOI:10.1002/mrm.27605>.
Maintained by Martin Wilson. Last updated 30 days ago.
brainmrimrsmrshubspectroscopyfortran
3.6 match 25 stars 8.52 score 81 scripts
djvanderlaan
LaF:Fast Access to Large ASCII Files
Methods for fast access to large ASCII files. Currently the following file formats are supported: comma separated format (CSV) and fixed width format. It is assumed that the files are too large to fit into memory, although the package can also be used to efficiently access files that do fit into memory. Methods are provided to access and process files blockwise. Furthermore, an opened file can be accessed as one would an ordinary data.frame. The LaF vignette gives an overview of the functionality provided.
Maintained by Jan van der Laan. Last updated 3 months ago.
3.5 match 54 stars 8.62 score 61 scripts 5 dependents
luisgarcez11
faersquarterlydata:FDA Adverse Event Reporting System Quarterly Data Extracting Tool
An easy framework to read FDA Adverse Event Reporting System XML/ASCII files <https://www.fda.gov/drugs/questions-and-answers-fdas-adverse-event-reporting-system-faers/fda-adverse-event-reporting-system-faers-latest-quarterly-data-files>.
Maintained by Luis Garcez. Last updated 9 months ago.
9.9 match 3.00 score 1 scripts
jmotif
jmotif:Time Series Analysis Toolkit Based on Symbolic Aggregate Discretization, i.e. SAX
Implements time series z-normalization, SAX, HOT-SAX, VSM, SAX-VSM, RePair, and RRA algorithms facilitating time series motif (i.e., recurrent pattern), discord (i.e., anomaly), and characteristic pattern discovery along with interpretable time series classification.
Maintained by Pavel Senin. Last updated 2 years ago.
anomalydiscoverydiscorddiscretizationkddsaxsax-vsmtimeseriescpp
5.5 match 55 stars 5.12 score 48 scripts
dankelley
oce:Analysis of Oceanographic Data
Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively by Kelley (2018) "Oceanographic Analysis with R" <doi:10.1007/978-1-4939-8844-0>.
Maintained by Dan Kelley. Last updated 1 days ago.
1.8 match 146 stars 15.42 score 4.2k scripts 18 dependents
rstudio
markdown:Render Markdown with 'commonmark'
Render Markdown to full and lightweight HTML/LaTeX documents with the 'commonmark' package. This package has been superseded by 'litedown'.
Maintained by Yihui Xie. Last updated 5 days ago.
1.8 match 85 stars 14.76 score 3.7k scripts 452 dependentsr-lib
desc:Manipulate DESCRIPTION Files
Tools to read, write, create, and manipulate DESCRIPTION files. It is intended for packages that create or manipulate other packages.
Maintained by Gรกbor Csรกrdi. Last updated 1 months ago.
1.8 match 123 stars 14.68 score 409 scripts 1.1k dependents
leifeld
texreg:Conversion of R Regression Output to LaTeX or HTML Tables
Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented. Details can be found in Leifeld (2013), JStatSoft <doi:10.18637/jss.v055.i08>.)
Maintained by Philip Leifeld. Last updated 2 months ago.
html-tableslatexlatex-tablesregressionreportingtabletexreg
1.8 match 113 stars 14.09 score 1.8k scripts 67 dependents
r-forge
RHRV:Heart Rate Variability Analysis of ECG Data
Allows users to import data files containing heartbeat positions in the most broadly used formats, to remove outliers or points with unacceptable physiological values present in the time series, to plot HRV data, and to perform time domain, frequency domain and nonlinear HRV analysis. See Garcia et al. (2017) <DOI:10.1007/978-3-319-65355-6>.
Maintained by Leandro Rodriguez-Linares. Last updated 6 months ago.
3.5 match 6.79 score 63 scripts 1 dependents
lrberge
stringmagic:Character String Operations and Interpolation, Magic Edition
Performs complex string operations compactly and efficiently. Supports string interpolation jointly with over 50 string operations. Also enhances regular string functions (like grep() and co). See an introduction at <https://lrberge.github.io/stringmagic/>.
Maintained by Laurent R Berge. Last updated 7 months ago.
2.3 match 15 stars 10.56 score 37 scripts 33 dependents
sigbertklinke
HKRbook:Apps and Data for the Book "Introduction to Statistics"
Functions, Shiny apps and data for the book "Introduction to Statistics" by Wolfgang Karl Hรคrdle, Sigbert Klinke, and Bernd Rรถnz (2015) <doi:10.1007/978-3-319-17704-5>.
Maintained by Sigbert Klinke. Last updated 2 years ago.
6.0 match 1 stars 3.70 score
leipzig
asciiruler:Render an ASCII Ruler
An ASCII ruler is for measuring text and is especially useful for sequence analysis. Included in this package are methods to create ASCII rulers and associated GenBank sequence blocks, multi-column text displays that make it easy for viewers to locate nucleotides by position.
Maintained by Jeremy Leipzig. Last updated 3 years ago.
7.9 match 2.70 score 5 scripts
eddelbuettel
RProtoBuf:R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal 'RPC' protocols and file formats. Additional documentation is available in two included vignettes one of which corresponds to our 'JSS' paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of 'Protocol Buffers' library is required; currently version 3.3.0 from 2017 is the stated minimum.
Maintained by Dirk Eddelbuettel. Last updated 1 months ago.
c-plus-plusprotocol-buffersprotobufcpp
1.9 match 73 stars 11.42 score 126 scripts 21 dependents
qsbase
qs:Quick Serialization of R Objects
Provides functions for quickly writing and reading any R object to and from disk.
Maintained by Travers Ching. Last updated 10 days ago.
compressiondata-storageencodingserializationlibzstdlz4cpp
1.3 match 414 stars 13.91 score 2.5k scripts 51 dependents
trinker
textclean:Text Cleaning Tools
Tools to clean and process text. Tools are geared at checking for substrings that are not optimal for analysis and replacing or removing them (normalizing) with more analysis friendly substrings (see Sproat, Black, Chen, Kumar, Ostendorf, & Richards (2001) <doi:10.1006/csla.2001.0169>) or extracting them into new variables. For example, emoticons are often used in text but not always easily handled by analysis algorithms. The replace_emoticon() function replaces emoticons with word equivalents.
Maintained by Tyler Rinker. Last updated 3 years ago.
data-mungingemoticonsregextext-analysistext-cleaning
1.8 match 248 stars 10.08 score 760 scripts 22 dependents
zarquon42b
Rvcg:Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Operations on triangular meshes based on 'VCGLIB'. This package integrates nicely with the R-package 'rgl' to render the meshes processed by 'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is an open source portable C++ templated library for manipulation, processing and displaying with OpenGL of triangle and tetrahedral meshes. The library, composed by more than 100k lines of code, is released under the GPL license, and it is the base of most of the software tools of the Visual Computing Lab of the Italian National Research Council Institute ISTI <https://vcg.isti.cnr.it/>, like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk <https://github.com/cnr-isti-vclab/vcglib> and patched to work with options determined by the configure script as well as to work with the header files included by 'RcppEigen'.
Maintained by Stefan Schlager. Last updated 5 months ago.
1.8 match 25 stars 10.05 score 195 scripts 29 dependents
njlyon0
supportR:Support Functions for Wrangling and Visualization
Suite of helper functions for data wrangling and visualization. The only theme for these functions is that they tend towards simple, short, and narrowly-scoped. These functions are built for tasks that often recur but are not large enough in scope to warrant an ecosystem of interdependent functions.
Maintained by Nicholas J Lyon. Last updated 4 months ago.
2.9 match 5 stars 6.22 score 15 scripts
brry
berryFunctions:Function Collection Related to Plotting and Hydrology
Draw horizontal histograms, color scattered points by 3rd dimension, enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings, use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays, fit multiple functions.
Maintained by Berry Boessenkool. Last updated 1 months ago.
1.9 match 13 stars 9.43 score 350 scripts 16 dependents
muschellij2
rscopus:Scopus Database 'API' Interface
Uses Elsevier 'Scopus' API <https://dev.elsevier.com/sc_apis.html> to download information about authors and their citations.
Maintained by John Muschelli. Last updated 1 years ago.
1.9 match 77 stars 9.33 score 124 scripts 3 dependents
natverse
nat:NeuroAnatomy Toolbox for Analysis of 3D Image Data
NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).
Maintained by Gregory Jefferis. Last updated 5 months ago.
3dconnectomicsimage-analysisneuroanatomyneuroanatomy-toolboxneuronneuron-morphologyneurosciencevisualisation
1.8 match 67 stars 9.94 score 436 scripts 2 dependents
l-ramirez-lopez
prospectr:Miscellaneous Functions for Processing and Sample Selection of Spectroscopic Data
Functions to preprocess spectroscopic data and conduct (representative) sample selection/calibration sampling.
Maintained by Leonardo Ramirez-Lopez. Last updated 11 days ago.
chemometricsderivativesinfrarednear-infrarednirpedometricspreprocessingresamplesamplingsignalsoil-spectroscopyspectroscopyopenblascppopenmp
1.7 match 42 stars 10.00 score 326 scripts 4 dependentstrinker
qdapRegex:Regular Expression Removal, Extraction, and Replacement Tools
A collection of regular expression tools associated with the 'qdap' package that may be useful outside of the context of discourse analysis. Tools include removal/extraction/replacement of abbreviations, dates, dollar amounts, email addresses, hash tags, numbers, percentages, citations, person tags, phone numbers, times, and zip codes.
Maintained by Tyler Rinker. Last updated 1 years ago.
1.8 match 50 stars 9.48 score 502 scripts 41 dependents
dmarcelinobr
SoundexBR:Phonetic-Coding for Portuguese
The SoundexBR package provides an algorithm for decoding names into phonetic codes, as pronounced in Portuguese. The goal is for homophones to be encoded to the same representation so that they can be matched despite minor differences in spelling. The algorithm mainly encodes consonants; a vowel will not be encoded unless it is the first letter. The soundex code resultant consists of a four digits long string composed by one letter followed by three numerical digits: the letter is the first letter of the name, and the digits encode the remaining consonants.
Maintained by Daniel Marcelino. Last updated 6 years ago.
4.3 match 13 stars 3.99 score 15 scripts
ggseg
ggsegExtra:Extra Utilities for the 'ggseg' and 'ggseg3d' Plotting Tools
Contains functions to create new data sets compatible with the 'ggseg' and 'ggseg3d' packages for plotting brain segmentations through R. Requires several external software to be installed on the system for atlas creations to work, and most of these are not available for windows. But atlas creation tools exist for 2d simple features data, and also 3d tri-surface mesh plots. Also has a list of compatible data sets and functions for easy installation of these.
Maintained by Athanasia Mo Mowinckel. Last updated 3 years ago.
3.7 match 55 stars 4.59 score 70 scripts
bbnkmp
txtplot:Text Based Plots
Provides functions to produce rudimentary ascii graphics directly in the terminal window. Provides a basic plotting function (and equivalents of curve, density, acf and barplot) as well as boxplot and image functions.
Maintained by Bjoern Bornkamp. Last updated 5 years ago.
2.8 match 26 stars 5.87 score 91 scripts 2 dependents
dusadrian
DDIwR:DDI with R
Useful functions for various DDI (Data Documentation Initiative) related inputs and outputs. Converts data files to and from DDI, SPSS, Stata, SAS, R and Excel, including user declared missing values.
Maintained by Adrian Dusa. Last updated 3 months ago.
3.3 match 15 stars 4.92 score 10 scripts
alesantuz
musclesyneRgies:Extract Muscle Synergies from Electromyography
Provides a framework to factorise electromyography (EMG) data. Tools are provided for raw data pre-processing, non negative matrix factorisation, classification of factorised data and plotting of obtained outcomes. In particular, reading from ASCII files is supported, along with wide-used filtering approaches to process EMG data. All steps include one or more sensible defaults that aim at simplifying the workflow. Yet, all functions are largely tunable at need. Example data sets are included.
Maintained by Alessandro Santuz. Last updated 2 months ago.
emgmuscle-synergiesnmfphysiolrstudio
2.3 match 40 stars 7.01 score 16 scripts
marc-girondot
HelpersMG:Tools for Environmental Analyses, Ecotoxicology and Various R Functions
Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Maintained by Marc Girondot. Last updated 2 months ago.
3.5 match 4 stars 4.59 score 160 scripts 4 dependents
schochastics
startifyR:R terminal startup messages
Quotes from ascii art characters. Mainly 'useful' as R terminal startup messages
Maintained by David Schoch. Last updated 5 months ago.
6.8 match 4 stars 2.30 score 2 scripts
dipterix
threeBrain:Your Advanced 3D Brain Visualization
A fast, interactive cross-platform, and easy to share 'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or 'AFNI/SUMA' surfaces. The viewer widget can be either standalone or embedded into 'R-shiny' applications. The standalone version only require a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox', 'Safari'), and can be inserted into any websites. The 'R-shiny' support allows the 3D viewer to be dynamically generated from reactive user inputs. Please check the publication by Wang, Magnotti, Zhang, and Beauchamp (2023, <doi:10.1523/ENEURO.0328-23.2023>) for electrode localization. This viewer has been fully adopted by 'RAVE' <https://rave.wiki>, an interactive toolbox to analyze 'iEEG' data by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>). Please check citation("threeBrain") for details.
Maintained by Zhengjia Wang. Last updated 2 days ago.
brainecogelectroencephalographyieeglocalizationmri-brainneuroimagingtemplate-brains
1.9 match 44 stars 8.24 score 38 scripts 1 dependents
cran
epiR:Tools for the Analysis of Epidemiological Data
Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Maintained by Mark Stevenson. Last updated 2 months ago.
1.8 match 10 stars 8.18 score 10 dependents
wjbraun
DAAG:Data Analysis and Graphics Data and Functions
Functions and data sets used in examples and exercises in the text Maindonald, J.H. and Braun, W.J. (2003, 2007, 2010) "Data Analysis and Graphics Using R", and in an upcoming Maindonald, Braun, and Andrews text that builds on this earlier text.
Maintained by W. John Braun. Last updated 11 months ago.
1.8 match 8.25 score 1.2k scripts 1 dependentsmuschellij2
freesurfer:Wrapper Functions for 'Freesurfer'
Wrapper functions that interface with 'Freesurfer' <https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.
Maintained by John Muschelli. Last updated 3 months ago.
1.9 match 10 stars 7.69 score 55 scripts 1 dependents
sophof
blaise:Read and Write FWF Files in the 'Blaise' Format
Can be used to read and write a fwf with an accompanying 'Blaise' datamodel. Blaise is the software suite built by Statistics Netherlands (CBS). It is essentially a way to write and collect surveys and perform statistical analysis on the data. It stores its data in fixed width format with an accompanying metadata file, this is the Blaise format. The package automatically interprets this metadata and reads the file into an R dataframe. When supplying a datamodel for writing, the dataframe will be automatically converted to that format and checked for compatibility. Supports dataframes, tibbles and LaF objects. For more information about 'Blaise', see <https://blaise.com/products/general-information>.
Maintained by Sjoerd Ophof. Last updated 1 years ago.
3.4 match 2 stars 4.30 score 9 scripts
brian-j-smith
boa:Bayesian Output Analysis Program (BOA) for MCMC
A menu-driven program and library of functions for carrying out convergence diagnostics and statistical and graphical analysis of Markov chain Monte Carlo sampling output.
Maintained by Brian J. Smith. Last updated 9 years ago.
4.0 match 1 stars 3.58 score 38 scripts
fsolt
ropercenter:Reproducible Data Retrieval from the Roper Center Data Archive
Reproducible, programmatic retrieval of datasets from the Roper Center data archive. The Roper Center for Public Opinion Research <https://ropercenter.cornell.edu> maintains the largest archive of public opinion data in existence, but researchers using these datasets are caught in a bind. The Center's terms and conditions bar redistribution of downloaded datasets, but to ensure that one's work can be reproduced, assessed, and built upon by others, one must provide access to the raw data one employed. The `ropercenter` package cuts this knot by providing registered users with programmatic, reproducible access to Roper Center datasets from within R.
Maintained by Frederick Solt. Last updated 2 years ago.
research-datawebservice-client
3.0 match 5 stars 4.40 score 4 scripts
jeffreyevans
yaImpute:Nearest Neighbor Observation Imputation and Evaluation Tools
Performs nearest neighbor-based imputation using one or more alternative approaches to processing multivariate data. These include methods based on canonical correlation: analysis, canonical correspondence analysis, and a multivariate adaptation of the random forest classification and regression techniques of Leo Breiman and Adele Cutler. Additional methods are also offered. The package includes functions for comparing the results from running alternative techniques, detecting imputation targets that are notably distant from reference observations, detecting and correcting for bias, bootstrapping and building ensemble imputations, and mapping results.
Maintained by Jeffrey S. Evans. Last updated 6 months ago.
1.8 match 3 stars 7.40 score 94 scripts 12 dependents
jonclayden
mmand:Mathematical Morphology in Any Number of Dimensions
Provides tools for performing mathematical morphology operations, such as erosion and dilation, on data of arbitrary dimensionality. Can also be used for finding connected components, resampling, filtering, smoothing and other image processing-style operations.
Maintained by Jon Clayden. Last updated 12 months ago.
image-processingmorphologyresamplingcppopenmp
1.7 match 37 stars 7.42 score 223 scripts 9 dependents
pbs-software
PBSmodelling:GUI Tools Made Easy: Interact with Models and Explore Data
Provides software to facilitate the design, testing, and operation of computer models. It focuses particularly on tools that make it easy to construct and edit a customized graphical user interface ('GUI'). Although our simplified 'GUI' language depends heavily on the R interface to the 'Tcl/Tk' package, a user does not need to know 'Tcl/Tk'. Examples illustrate models built with other R packages, including 'PBSmapping', 'PBSddesolve', and 'BRugs'. A complete user's guide 'PBSmodelling-UG.pdf' shows how to use this package effectively.
Maintained by Rowan Haigh. Last updated 4 months ago.
1.9 match 2 stars 6.76 score 120 scripts 4 dependents
merck
pkglite:Compact Package Representations
A tool, grammar, and standard to represent and exchange R package source code as text files. Converts one or more source packages to a text file and restores the package structures from the file.
Maintained by Nan Xiao. Last updated 4 months ago.
clinical-trialsectdpackaging-toolpharmaverse
1.8 match 29 stars 6.75 score 12 scripts
kurthornik
tau:Text Analysis Utilities
Utilities for text analysis.
Maintained by Kurt Hornik. Last updated 5 months ago.
3.0 match 4.02 score 115 scripts 6 dependentscran
afmToolkit:Functions for Atomic Force Microscope Force-Distance Curves Analysis
Set of functions for analyzing Atomic Force Microscope (AFM) force-distance curves. It allows to obtain the contact and unbinding points, perform the baseline correction, estimate the Young's modulus, fit up to two exponential decay function to a stress-relaxation / creep experiment, obtain adhesion energies. These operations can be done either over a single F-d curve or over a set of F-d curves in batch mode.
Maintained by Rafael Benitez. Last updated 8 years ago.
7.0 match 1.70 score
bjw34032
oro.dicom:Rigorous - DICOM Input / Output
Data input/output functions for data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.
Maintained by Brandon Whitcher. Last updated 1 years ago.
1.8 match 1 stars 6.35 score 188 scripts 8 dependents
jayqi
spongebob:SpongeBob-Case Converter : spOngEboB-CASe CoNVertER
Convert text (and text in R objects) to Mocking SpongeBob case <https://knowyourmeme.com/memes/mocking-spongebob> and show them off in fun ways. CoNVErT TexT (AnD TeXt In r ObJeCtS) To MOCkINg SpoNgebOb CAsE <https://knowyourmeme.com/memes/mocking-spongebob> aND shOw tHem OFf IN Fun WayS.
Maintained by Jay Qi. Last updated 6 years ago.
6.4 match 1 stars 1.70 score 6 scripts
fabrice-rossi
mixvlmc:Variable Length Markov Chains with Covariates
Estimates Variable Length Markov Chains (VLMC) models and VLMC with covariates models from discrete sequences. Supports model selection via information criteria and simulation of new sequences from an estimated model. See Bรผhlmann, P. and Wyner, A. J. (1999) <doi:10.1214/aos/1018031204> for VLMC and Zanin Zambom, A., Kim, S. and Lopes Garcia, N. (2022) <doi:10.1111/jtsa.12615> for VLMC with covariates.
Maintained by Fabrice Rossi. Last updated 10 months ago.
machine-learningmarkov-chainmarkov-modelstatisticstime-seriescpp
1.7 match 2 stars 6.23 score 20 scripts
benmbutler
powdR:Full Pattern Summation of X-Ray Powder Diffraction Data
Full pattern summation of X-ray powder diffraction data as described in Chipera and Bish (2002) <doi:10.1107/S0021889802017405> and Butler and Hillier (2021) <doi:10.1016/j.cageo.2020.104662>. Derives quantitative estimates of crystalline and amorphous phase concentrations in complex mixtures.
Maintained by Benjamin Butler. Last updated 3 years ago.
1.9 match 12 stars 5.56 score 30 scripts
ljvillanueva
soundecology:Soundscape Ecology
Functions to calculate indices for soundscape ecology and other ecology research that uses audio recordings.
Maintained by Luis J. Villanueva-Rivera. Last updated 6 years ago.
1.9 match 24 stars 5.53 score 95 scripts
fvafrcu
fritools:Utilities for the Forest Research Institute of the State Baden-Wuerttemberg
Miscellaneous utilities, tools and helper functions for finding and searching files on disk, searching for and removing R objects from the workspace. Does not import or depend on any third party package, but on core R only (i.e. it may depend on packages with priority 'base').
Maintained by Andreas Dominik Cullmann. Last updated 27 days ago.
1.7 match 5.98 score 4 scripts 6 dependents
irworkshop
campfin:Wrangle Campaign Finance Data
Explore and normalize American campaign finance data. Created by the Investigative Reporting Workshop to facilitate work on The Accountability Project, an effort to collect public data into a central, standard database that is more easily searched: <https://publicaccountability.org/>.
Maintained by Kiernan Nicholls. Last updated 1 years ago.
campaign-financedata-journalism
1.8 match 17 stars 5.66 score 54 scriptsr-lib
cli:Helpers for Developing Command Line Interfaces
A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.
Maintained by Gรกbor Csรกrdi. Last updated 2 days ago.
0.5 match 664 stars 19.33 score 1.4k scripts 14k dependents
bioc
seqTools:Analysis of nucleotide, sequence and quality content on fastq files
Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.
Maintained by Wolfgang Kaisers. Last updated 5 months ago.
1.7 match 5.57 score 52 scripts 1 dependents
ftwkoopmans
goat:Gene Set Analysis Using the Gene Set Ordinal Association Test
Perform gene set enrichment analyses using the Gene set Ordinal Association Test (GOAT) algorithm and visualize your results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.
Maintained by Frank Koopmans. Last updated 22 days ago.
bioinformaticsgeneset-enrichmentgeneset-enrichment-analysiscppopenmp
2.0 match 10 stars 4.40 score 8 scripts
glotaran
TIMP:Fitting Separable Nonlinear Models in Spectroscopy and Microscopy
A problem solving environment (PSE) for fitting separable nonlinear models to measurements arising in physics and chemistry experiments, as described by Mullen & van Stokkum (2007) <doi:10.18637/jss.v018.i03> for its use in fitting time resolved spectroscopy data, and as described by Laptenok et al. (2007) <doi:10.18637/jss.v018.i08> for its use in fitting Fluorescence Lifetime Imaging Microscopy (FLIM) data, in the study of Fรถrster Resonance Energy Transfer (FRET). `TIMP` also serves as the computation backend for the `GloTarAn` software, a graphical user interface for the package, as described in Snellenburg et al. (2012) <doi:10.18637/jss.v049.i03>.
Maintained by Joris Snellenburg. Last updated 2 years ago.
1.7 match 3 stars 4.80 score 14 scripts 1 dependentsbrry
rskey:Create Custom 'Rstudio' Keyboard Shortcuts
Create custom keyboard shortcuts to examine code selected in the 'Rstudio' editor. F3 can for example yield 'str(selection)' and F7 open the source code of CRAN and base package functions on 'github'.
Maintained by Berry Boessenkool. Last updated 6 months ago.
2.3 match 7 stars 3.54 score
stulacy
epitab:Flexible Contingency Tables for Epidemiology
Builds contingency tables that cross-tabulate multiple categorical variables and also calculates various summary measures. Export to a variety of formats is supported, including: 'HTML', 'LaTeX', and 'Excel'.
Maintained by Stuart Lacy. Last updated 7 years ago.
1.8 match 1 stars 4.41 score 17 scripts
rmi-pacta
pacta.loanbook:Easily Install and Load PACTA for Banks Packages
PACTA (Paris Agreement Capital Transition Assessment) for Banks is a tool that allows banks to calculate the climate alignment of their corporate lending portfolios. This package is designed to make it easy to install and load multiple PACTA for Banks packages in a single step. It also provides thorough documentation - the PACTA for Banks cookbook at <https://rmi-pacta.github.io/pacta.loanbook/articles/cookbook_overview.html> - on how to run a PACTA for Banks analysis. This covers prerequisites for the analysis, the separate steps of running the analysis, the interpretation of PACTA for Banks results, and advanced use cases.
Maintained by Jacob Kastl. Last updated 2 days ago.
1.7 match 1 stars 4.68 score 12 scripts
ksawicka
spup:Spatial Uncertainty Propagation Analysis
Uncertainty propagation analysis in spatial environmental modelling following methodology described in Heuvelink et al. (2007) <doi:10.1080/13658810601063951> and Brown and Heuvelink (2007) <doi:10.1016/j.cageo.2006.06.015>. The package provides functions for examining the uncertainty propagation starting from input data and model parameters, via the environmental model onto model outputs. The functions include uncertainty model specification, stochastic simulation and propagation of uncertainty using Monte Carlo (MC) techniques. Uncertain variables are described by probability distributions. Both numerical and categorical data types are handled. Spatial auto-correlation within an attribute and cross-correlation between attributes is accommodated for. The MC realizations may be used as input to the environmental models called from R, or externally.
Maintained by Kasia Sawicka. Last updated 1 years ago.
monte-carlospatialuncertainty-analysisuncertainty-propagation
1.2 match 9 stars 6.31 score 57 scripts
chaoliu-cl
Goodreader:Scrape and Analyze 'Goodreads' Book Data
A comprehensive toolkit for scraping and analyzing book data from <https://www.goodreads.com/>. This package provides functions to search for books, scrape book details and reviews, perform sentiment analysis on reviews, and conduct topic modeling. It's designed for researchers, data analysts, and book enthusiasts who want to gain insights from 'Goodreads' data.
Maintained by Chao Liu. Last updated 13 days ago.
1.7 match 4.40 score 5 scripts
dcomtois
summarytools:Tools to Quickly and Neatly Summarize Data
Data frame summaries, cross-tabulations, weight-enabled frequency tables and common descriptive (univariate) statistics in concise tables available in a variety of formats (plain ASCII, Markdown and HTML). A good point-of-entry for exploring data, both for experienced and new R users.
Maintained by Dominic Comtois. Last updated 1 days ago.
descriptive-statisticsfrequency-tablehtml-reportmarkdownpanderpandocpandoc-markdownrmarkdownrstudio
0.5 match 526 stars 14.52 score 2.9k scripts 6 dependents
rkrug
plantuml:Create UML Graphs using PlantUML Syntax
Create UML graphs using the PlantUML language. These are either shown in a graphics device or saved as a file.
Maintained by Rainer M. Krug. Last updated 2 years ago.
1.3 match 78 stars 5.61 score 26 scripts
stla
braids:The Braid Groups
Deals with the braid groups. Includes creation of some specific braids, group operations, free reduction, and Bronfman polynomials. Braid theory has applications in fluid mechanics and quantum physics. The code is adapted from the 'Haskell' library 'combinat', and is based on Birman and Brendle (2005) <doi:10.48550/arXiv.math/0409205>.
Maintained by Stรฉphane Laurent. Last updated 11 months ago.
2.3 match 3.30 score
alshum
hashids:Generate Short Unique YouTube-Like IDs (Hashes) from Integers
An R port of the hashids library. hashids generates YouTube-like hashes from integers or vector of integers. Hashes generated from integers are relatively short, unique and non-seqential. hashids can be used to generate unique ids for URLs and hide database row numbers from the user. By default hashids will avoid generating common English cursewords by preventing certain letters being next to each other. hashids are not one-way: it is easy to encode an integer to a hashid and decode a hashid back into an integer.
Maintained by Alex Shum. Last updated 6 years ago.
1.8 match 18 stars 4.10 score 14 scripts
cheuerde
plotcli:Command Line Interface Plotting
The 'plotcli' package provides terminal-based plotting in R. It supports colored scatter plots, line plots, bar plots, and box plots. The package allows users to customize plot appearance, add titles, labels, ticks, and legends, and output the plot as a text-based visualization.
Maintained by Claas Heuer. Last updated 11 months ago.
1.3 match 10 stars 5.86 score 12 scripts
nicholasjcooper
NCmisc:Miscellaneous Functions for Creating Adaptive Functions and Scripts
A set of handy functions. Includes a versatile one line progress bar, one line function timer with detailed output, time delay function, text histogram, object preview, CRAN package search, simpler package installer, Linux command install check, a flexible Mode function, top function, simulation of correlated data, and more.
Maintained by Nicholas Cooper. Last updated 2 years ago.
1.9 match 3.86 score 172 scripts 5 dependents
pythonicr
strs:'Python' Style String Functions
A comprehensive set of string manipulation functions based on those found in 'Python' without relying on 'reticulate'. It provides functions that intend to (1) make it easier for users familiar with 'Python' to work with strings, (2) reduce the complexity often associated with string operations, (3) and enable users to write more readable and maintainable code that manipulates strings.
Maintained by Garrett Shipley. Last updated 2 months ago.
1.8 match 2 stars 3.90 score 5 scriptsbioc
ChIPsim:Simulation of ChIP-seq experiments
A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.
Maintained by Peter Humburg. Last updated 5 months ago.
1.8 match 4.00 score 3 scripts
alj1983
MaxentVariableSelection:Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling
Complex niche models show low performance in identifying the most important range-limiting environmental variables and in transferring habitat suitability to novel environmental conditions (Warren and Seifert, 2011 <DOI:10.1890/10-1171.1>; Warren et al., 2014 <DOI:10.1111/ddi.12160>). This package helps to identify the most important set of uncorrelated variables and to fine-tune Maxent's regularization multiplier. In combination, this allows to constrain complexity and increase performance of Maxent niche models (assessed by information criteria, such as AICc (Akaike, 1974 <DOI:10.1109/TAC.1974.1100705>), and by the area under the receiver operating characteristic (AUC) (Fielding and Bell, 1997 <DOI:10.1017/S0376892997000088>). Users of this package should be familiar with Maxent niche modelling.
Maintained by "Alexander Jueterbock". Last updated 6 years ago.
1.3 match 4 stars 5.34 score 11 scripts
toscm
toscutil:Utility Functions
Base R sometimes requires verbose statements for simple, often recurring tasks, such as printing text without trailing space, ending with newline. This package aims at providing shorthands for such tasks.
Maintained by Tobias Schmidt. Last updated 23 days ago.
1.8 match 1 stars 3.65 score 1 scripts 1 dependentsrmi-pacta
pactaverse:Easily Install and Load the 'PACTA-verse'
The 'pactaverse' is a set of packages that work to help R users implement various functionality related to the PACTA open source project.
Maintained by Jackson Hoffart. Last updated 3 months ago.
1.8 match 6 stars 3.73 score 3 scripts
sinkovit
mkde:2D and 3D Movement-Based Kernel Density Estimates (MKDEs)
Provides functions to compute and visualize movement-based kernel density estimates (MKDEs) for animal utilization distributions in 2 or 3 spatial dimensions.
Maintained by Robert Sinkovits. Last updated 3 months ago.
3.3 match 1.90 score 40 scripts
hanase
bayesTFR:Bayesian Fertility Projection
Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-011-0040-5> <doi:10.18637/jss.v106.i08>. Subnational probabilistic projections are also supported <doi:10.4054/DemRes.2018.38.60>.
Maintained by Hana Sevcikova. Last updated 4 months ago.
1.9 match 2 stars 3.29 score 58 scripts 3 dependents
skranz
stringtools:Tools for working with strings in R
Tools for working with strings in R
Maintained by Sebastian Kranz. Last updated 3 years ago.
1.7 match 2 stars 3.66 score 29 scripts 26 dependents
marekhlavac
stargazer:Well-Formatted Regression and Summary Statistics Tables
Produces LaTeX code, HTML/CSS code and ASCII text for well-formatted tables that hold regression analysis results from several models side-by-side, as well as summary statistics.
Maintained by Marek Hlavac. Last updated 3 years ago.
0.5 match 35 stars 10.84 score 12k scripts 10 dependents
jacobwharris
speedycode:Automate Code for Adding Labels, Recoding and Renaming Variables, and Converting ASCII Files
Label, recode, rename, and convert datasets and ASCII files more efficiently. 'speedycode' automates the code necessary for labeling variables with the 'labelled' package, recoding and renaming variables with 'dplyr' syntax, and converting ASCII files with the 'readroper' package. Most functions require only the name of the dataset and the code will be automatically written. Some convenience functions useful for converting ASCII files are also included.
Maintained by Jacob Harris. Last updated 3 years ago.
5.4 match 1.00 scorecran
NISTunits:Fundamental Physical Constants and Unit Conversions from NIST
Fundamental physical constants (Quantity, Value, Uncertainty, Unit) for SI (International System of Units) and non-SI units, plus unit conversions Based on the data from NIST (National Institute of Standards and Technology, USA)
Maintained by Jose Gama. Last updated 9 years ago.
1.8 match 2.85 score 10 dependentsjonathanlees
ProfessR:Grades Setting and Exam Maker
Programs to determine student grades and create examinations from Question banks. Programs will create numerous multiple choice exams, randomly shuffled, for different versions of same question list.
Maintained by Jonathan M. Lees. Last updated 2 years ago.
1.8 match 2.91 score 41 scripts
adatar-do
labeler:Easy to use and share data labels in R
Functions to assign and use data labels in an easy and efficient way. With an easy-to-share structure.
Maintained by Daniel E. de la Rosa. Last updated 6 months ago.
2.9 match 1.70 score 5 scriptsbioc
affxparser:Affymetrix File Parsing SDK
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Maintained by Kasper Daniel Hansen. Last updated 2 months ago.
infrastructuredataimportmicroarrayproprietaryplatformsonechannelbioconductorcpp
0.5 match 7 stars 8.19 score 65 scripts 14 dependentskwb-r
kwb.fakin:Functions Used in Our Fakin Project
This package contains all functions and evaluations related to KWB project "FAKIN". Set the Subversion setting 'enable-auto-props' to 'yes' so that the 'auto-probs' options are considered.
Maintained by Hauke Sonnenberg. Last updated 3 years ago.
project-fakinresearch-data-management
1.2 match 1 stars 3.40 score 1 scriptscran
STAND:Statistical Analysis of Non-Detects
Provides functions for the analysis of occupational and environmental data with non-detects. Maximum likelihood (ML) methods for censored log-normal data and non-parametric methods based on the product limit estimate (PLE) for left censored data are used to calculate all of the statistics recommended by the American Industrial Hygiene Association (AIHA) for the complete data case. Functions for the analysis of complete samples using exact methods are also provided for the lognormal model. Revised from 2007-11-05 'survfit~1'.
Maintained by E. P. Adams. Last updated 9 years ago.
1.8 match 2.00 score
mmaechler
VLMC:Variable Length Markov Chains ('VLMC') Models
Functions, Classes & Methods for estimation, prediction, and simulation (bootstrap) of Variable Length Markov Chain ('VLMC') Models.
Maintained by Martin Maechler. Last updated 7 months ago.
1.8 match 1.92 score 28 scripts
benjaminwolfe
signs:Insert Proper Minus Signs
Provides convenience functions to replace hyphen-minuses (ASCII 45) with proper minus signs (Unicode character 2212). The true minus matches the plus symbol in width, line thickness, and height above the baseline. It was designed for mathematics, looks better in presentation, and is understood properly by screen readers.
Maintained by Benjamin E. Wolfe. Last updated 5 years ago.
0.5 match 18 stars 6.36 score 28 scripts 3 dependents
calderonsamuel
casemisc:Funciones miscelaneas de Samuel Calderon Serrano
Funciones diversas recurrentemente usadas por Samuel Calderon.
Maintained by Samuel Calderon. Last updated 3 years ago.
1.8 match 1.70 score
egenn
music:Learn and Experiment with Music Theory
An aid for learning and using music theory. You can build chords, scales, and chord progressions using 12-note equal temperament tuning (12-ET) or user-defined tuning. Includes functions to visualize notes on a piano using ASCII plots in the console and to plot waveforms using base graphics. It allows simple playback of notes and chords using the 'audio' package.
Maintained by Efstathios D. Gennatas. Last updated 2 years ago.
0.5 match 48 stars 5.63 score 896 scripts
mbojan
rgraph6:Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings
Encode network data as strings of printable ASCII characters. Implemented functions include encoding and decoding adjacency matrices, edgelists, igraph, and network objects to/from formats 'graph6', 'sparse6', and 'digraph6'. The formats and methods are described in McKay, B.D. and Piperno, A (2014) <doi:10.1016/j.jsc.2013.09.003>.
Maintained by Michal Bojanowski. Last updated 6 months ago.
0.5 match 12 stars 5.08 score 8 scriptseddelbuettel
RcppFastFloat:'Rcpp' Bindings for the 'fast_float' Header-Only Library for Number Parsing
Converting ascii text into (floating-point) numeric values is a very common problem. The 'fast_float' header-only C++ library by Daniel Lemire does it very well and very fast at up to or over to 1 gigabyte per second as described in more detail in <doi:10.1002/spe.2984>. 'fast_float' is licensed under the Apache 2.0 license and provided here for use by other R packages via a simple 'LinkingTo:' statement.
Maintained by Dirk Eddelbuettel. Last updated 2 months ago.
0.5 match 19 stars 4.98 score 6 scripts
kloppen
rde:Reproducible Data Embedding
Allows caching of raw data directly in R code. This allows R scripts and R Notebooks to be shared and re-run on a machine without access to the original data. Cached data is encoded into an ASCII string that can be pasted into R code. When the code is run, the data is automatically loaded from the cached version if the original data file is unavailable. Works best for small datasets (a few hundred observations).
Maintained by Stefan Kloppenborg. Last updated 5 years ago.
0.5 match 1 stars 3.70 score 7 scripts
cdruee
readmet:Read some less Popular Formats Used in Meteorology
Contains tools for reading and writing data from or to files in the formats: akterm, dmna, Scintec Format-1, and Campbell Scientific TOA5.
Maintained by Clemens Druee. Last updated 1 years ago.
1.6 match 1.00 scorer-forge
rNOMADS:An interface to the NOAA Operational Model Archive and Distribution System
An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in GRIB format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Maintained by Daniel C. Bowman. Last updated 2 years ago.
0.5 match 3.11 score 65 scripts
matt-dray
r.oguelike:Play a Roguelike 'Game' in the Console
Play with a simple ASCII-only tile-based toy in the console, inspired heavily by roguelike games like Rogue (1980). Proof of concept.
Maintained by Matt Dray. Last updated 2 years ago.
0.5 match 18 stars 2.95 score 4 scripts
radivot
SEERaBomb:SEER and Atomic Bomb Survivor Data Analysis Tools
Creates SEER (Surveillance, Epidemiology and End Results) and A-bomb data binaries from ASCII sources and provides tools for estimating SEER second cancer risks. Methods are described in <doi:10.1038/leu.2015.258>.
Maintained by Tomas Radivoyevitch. Last updated 5 years ago.
0.5 match 2.85 score 176 scripts
landroni
RcmdrPlugin.Export:Export R Output to LaTeX or HTML
Export Rcmdr output to LaTeX or HTML code. The plug-in was originally intended to facilitate exporting Rcmdr output to formats other than ASCII text and to provide R novices with an easy-to-use, easy-to-access reference on exporting R objects to formats suited for printed output. The package documentation contains several pointers on creating reports, either by using conventional word processors or LaTeX/LyX.
Maintained by Liviu Andronic. Last updated 9 years ago.
0.5 match 2.70 score 3 scripts
cran
serial:The Serial Interface Package
Enables reading and writing binary and ASCII data to RS232/RS422/RS485 or any other virtual serial interface of the computer.
Maintained by Martin Seilmayer. Last updated 5 years ago.
0.5 match 1.48 score 1 dependentscran
NostalgiR:Advanced Text-Based Plots
Provides functions to produce advanced ascii graphics, directly to the terminal window. This package utilizes the txtplot() function from the 'txtplot' package, to produce text-based histograms, empirical cumulative distribution function plots, scatterplots with fitted and regression lines, quantile plots, density plots, image plots, and contour plots.
Maintained by Hien D. Nguyen. Last updated 9 years ago.
0.5 match 1 stars 1.00 scorecran
rplotengine:R as a Plotting Engine
Generate basic charts either by custom applications, or from a small script launched from the system console, or within the R console. Two ASCII text files are necessary: (1) The graph parameters file, which name is passed to the function 'rplotengine()'. The user can specify the titles, choose the type of the graph, graph output formats (e.g. png, eps), proportion of the X-axis and Y-axis, position of the legend, whether to show or not a grid at the background, etc. (2) The data to be plotted, which name is specified as a parameter ('data_filename') in the previous file. This data file has a tabulated format, with a single character (e.g. tab) between each column. Optionally, the file could include data columns for showing confidence intervals.
Maintained by Pedro-Pablo Garrido Abenza. Last updated 2 years ago.
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