Showing 9 of total 9 results (show query)
r-lib
coro:'Coroutines' for R
Provides 'coroutines' for R, a family of functions that can be suspended and resumed later on. This includes 'async' functions (which await) and generators (which yield). 'Async' functions are based on the concurrency framework of the 'promises' package. Generators are based on a dependency free iteration protocol defined in 'coro' and are compatible with iterators from the 'reticulate' package.
Maintained by Lionel Henry. Last updated 1 months ago.
asynccoroutinesgeneratoriteratorpromisesreticulate
167 stars 11.89 score 105 scripts 53 dependents
vegawidget
altair:Interface to 'Altair'
Interface to 'Altair' <https://altair-viz.github.io>, which itself is a 'Python' interface to 'Vega-Lite' <https://vega.github.io/vega-lite/>. This package uses the 'Reticulate' framework <https://rstudio.github.io/reticulate/> to manage the interface between R and 'Python'.
Maintained by Ian Lyttle. Last updated 1 years ago.
altairinteractivereticulatevega-litevisualization
91 stars 6.94 score 23 scripts 1 dependents
midasverse
rMIDAS:Multiple Imputation with Denoising Autoencoders
A tool for multiply imputing missing data using 'MIDAS', a deep learning method based on denoising autoencoder neural networks. This algorithm offers significant accuracy and efficiency advantages over other multiple imputation strategies, particularly when applied to large datasets with complex features. Alongside interfacing with 'Python' to run the core algorithm, this package contains functions for processing data before and after model training, running imputation model diagnostics, generating multiple completed datasets, and estimating regression models on these datasets.
Maintained by Thomas Robinson. Last updated 1 years ago.
deep-learningimputation-methodsneural-networkreticulatetensorflow
34 stars 6.53 score 33 scripts
terrytangyuan
scaffolder:Scaffolding Interfaces to Packages in Other Programming Languages
Comprehensive set of tools for scaffolding R interfaces to modules, classes, functions, and documentations written in other programming languages, such as 'Python'.
Maintained by Yuan Tang. Last updated 2 years ago.
code-generationpythonreticulatescaffolding
27 stars 6.13 score 9 scripts
mlampros
fuzzywuzzyR:Fuzzy String Matching
Fuzzy string matching implementation of the 'fuzzywuzzy' <https://github.com/seatgeek/fuzzywuzzy> 'python' package. It uses the Levenshtein Distance <https://en.wikipedia.org/wiki/Levenshtein_distance> to calculate the differences between sequences.
Maintained by Lampros Mouselimis. Last updated 2 years ago.
fuzzywuzzymatchingpythonreticulatestring
37 stars 5.87 score 40 scripts
nanxstats
ssw:Striped Smith-Waterman Algorithm for Sequence Alignment using SIMD
Provides an R interface for 'SSW' (Striped Smith-Waterman) via its 'Python' binding 'ssw-py'. 'SSW' is a fast 'C' and 'C++' implementation of the Smith-Waterman algorithm for pairwise sequence alignment using Single-Instruction-Multiple-Data (SIMD) instructions. 'SSW' enhances the standard algorithm by efficiently returning alignment information and suboptimal alignment scores. The core 'SSW' library offers performance improvements for various bioinformatics tasks, including protein database searches, short-read alignments, primary and split-read mapping, structural variant detection, and read-overlap graph generation. These features make 'SSW' particularly useful for genomic applications. Zhao et al. (2013) <doi:10.1371/journal.pone.0082138> developed the original 'C' and 'C++' implementation.
Maintained by Nan Xiao. Last updated 6 months ago.
bioinformaticsreticulatesequence-alignmentsimdsmith-waterman
6 stars 5.18 scoremlampros
nmslibR:Non Metric Space (Approximate) Library
A Non-Metric Space Library ('NMSLIB' <https://github.com/nmslib/nmslib>) wrapper, which according to the authors "is an efficient cross-platform similarity search library and a toolkit for evaluation of similarity search methods. The goal of the 'NMSLIB' <https://github.com/nmslib/nmslib> Library is to create an effective and comprehensive toolkit for searching in generic non-metric spaces. Being comprehensive is important, because no single method is likely to be sufficient in all cases. Also note that exact solutions are hardly efficient in high dimensions and/or non-metric spaces. Hence, the main focus is on approximate methods". The wrapper also includes Approximate Kernel k-Nearest-Neighbor functions based on the 'NMSLIB' <https://github.com/nmslib/nmslib> 'Python' Library.
Maintained by Lampros Mouselimis. Last updated 2 years ago.
approximate-nearest-neighbor-searchnmslibnon-metricpythonreticulatecppopenmp
12 stars 5.14 score 23 scriptsmlampros
GeoMongo:Geospatial Queries Using 'PyMongo'
Utilizes methods of the 'PyMongo' 'Python' library to initialize, insert and query 'GeoJson' data (see <https://github.com/mongodb/mongo-python-driver> for more information on 'PyMongo'). Furthermore, it allows the user to validate 'GeoJson' objects and to use the console for 'MongoDB' (bulk) commands. The 'reticulate' package provides the 'R' interface to 'Python' modules, classes and functions.
Maintained by Lampros Mouselimis. Last updated 2 years ago.
geojsonmongodbpymongoreticulate
5 stars 4.51 score 13 scripts
ncss-tech
rosettaPTF:R Frontend for Rosetta Pedotransfer Functions
Access Python rosetta-soil pedotransfer functions in an R environment. Rosetta is a neural network-based model for predicting unsaturated soil hydraulic parameters from basic soil characterization data. The model predicts parameters for the van Genuchten unsaturated soil hydraulic properties model, using sand, silt, and clay, bulk density and water content. The codebase is now maintained by Dr. Todd Skaggs and other U.S. Department of Agriculture employees. This R package is intended to provide for use cases that involve many thousands of calls to the pedotransfer function. Less demanding use cases are encouraged to use the web interface or API endpoint. There are additional wrappers of the API endpoints provided by the soilDB R package `ROSETTA()` method.
Maintained by Andrew G. Brown. Last updated 3 months ago.
hydraulichydrologyksatpedotransferpythonreticulaterosettasoil
8 stars 2.90 score 8 scripts