Showing 2 of total 2 results (show query)
privefl
bigsnpr:Analysis of Massive SNP Arrays
Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
Maintained by Florian Privé. Last updated 27 days ago.
big-databioinformaticsmemory-mapped-fileparallel-computingpolygenic-scorespopulation-structure-inferencesnp-datastatistical-methodsopenblaszlibcppopenmp
200 stars 11.44 score 1.5k scripts 3 dependentsxinghuq
DA:Discriminant Analysis for Evolutionary Inference
Discriminant Analysis (DA) for evolutionary inference (Qin, X. et al, 2020, <doi:10.22541/au.159256808.83862168>), especially for population genetic structure and community structure inference. This package incorporates the commonly used linear and non-linear, local and global supervised learning approaches (discriminant analysis), including Linear Discriminant Analysis of Kernel Principal Components (LDAKPC), Local (Fisher) Linear Discriminant Analysis (LFDA), Local (Fisher) Discriminant Analysis of Kernel Principal Components (LFDAKPC) and Kernel Local (Fisher) Discriminant Analysis (KLFDA). These discriminant analyses can be used to do ecological and evolutionary inference, including demography inference, species identification, and population/community structure inference.
Maintained by Xinghu Qin. Last updated 4 years ago.
biomedicalinformaticschipseqclusteringcoveragednamethylationdifferentialexpressiondifferentialmethylationsoftwaredifferentialsplicingepigeneticsfunctionalgenomicsgeneexpressiongenesetenrichmentgeneticsimmunooncologymultiplecomparisonnormalizationpathwaysqualitycontrolrnaseqregressionsagesequencingsystemsbiologytimecoursetranscriptiontranscriptomicsdapcdiscriminant-analysisecologicalkernelkernel-localkernel-principle-componentspopulation-structure-inferenceprincipal-components
1 stars 4.70 score 1 scripts