Showing 4 of total 4 results (show query)
neurogenomics
rworkflows:Test, Document, Containerise, and Deploy R Packages
Reproducibility is essential to the progress of research, yet achieving it remains elusive even in computational fields. Continuous Integration (CI) platforms offer a powerful way to launch automated workflows to check and document code, but often require considerable time, effort, and technical expertise to setup. We therefore developed the rworkflows suite to make robust CI workflows easy and freely accessible to all R package developers. rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template, 2) an R package to quickly implement a standardised workflow, and 3) a centrally maintained GitHub Action.
Maintained by Brian Schilder. Last updated 2 months ago.
softwareworkflowmanagementbioconductorcontainerscontinuous-integrationdockerdockerhubgithub-actionsreproducibilityworkflows
79 stars 7.60 score 6 scripts
nanxstats
liftr:Containerize R Markdown Documents for Continuous Reproducibility
Persistent reproducible reporting by containerization of R Markdown documents.
Maintained by Nan Xiao. Last updated 1 years ago.
containerizationdockerdynamic-documentsknitrliftrreproducible-researchreproducible-sciencermarkdownstatistical-computing
172 stars 7.03 score 21 scripts
dmolitor
tugboat:Build a Docker Image from a Directory or Project
Simple utilities to generate a Dockerfile from a directory or project, build the corresponding Docker image, and push the image to DockerHub.
Maintained by Daniel Molitor. Last updated 3 months ago.
21 stars 4.72 score 4 scriptsdmolitor
jetty:Execute R in a 'Docker' Context
The goal of 'jetty' is to execute R functions and code snippets in an isolated R subprocess within a 'Docker' container and return the evaluated results to the local R session. 'jetty' can install necessary packages at runtime and seamlessly propagates errors and outputs from the 'Docker' subprocess back to the main session. 'jetty' is primarily designed for sandboxed testing and quick execution of example code.
Maintained by Daniel Molitor. Last updated 2 months ago.
7 stars 4.38 score 23 scripts