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bioc
megadepth:megadepth: BigWig and BAM related utilities
This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.
Maintained by David Zhang. Last updated 4 months ago.
softwarecoveragedataimporttranscriptomicsrnaseqpreprocessingbambigwigdasptermegadepthrecount2recount3
12 stars 6.69 score 7 scripts 3 dependents
hsbadr
additive:Bindings for Additive TidyModels
Fit Generalized Additive Models (GAM) using 'mgcv' with 'parsnip'/'tidymodels' via 'additive' <doi:10.5281/zenodo.4784245>. 'tidymodels' is a collection of packages for machine learning; see Kuhn and Wickham (2020) <https://www.tidymodels.org>). The technical details of 'mgcv' are described in Wood (2017) <doi:10.1201/9781315370279>.
Maintained by Hamada S. Badr. Last updated 2 months ago.
additivebamgamgeneralized-additive-modelsmgcvtidymodels
7 stars 5.99 score 14 scripts