Showing 200 of total 3417 results (show query)

miraisolutions

XLConnect:Excel Connector for R

Provides comprehensive functionality to read, write and format Excel data.

Maintained by Martin Studer. Last updated 18 days ago.

cross-platformexcelr-languagexlconnectopenjdk

43.1 match 130 stars 12.28 score 1.2k scripts 1 dependents

matthewheun

matsbyname:An Implementation of Matrix Mathematics that Respects Row and Column Names

An implementation of matrix mathematics wherein operations are performed "by name."

Maintained by Matthew Heun. Last updated 10 days ago.

74.2 match 2 stars 6.65 score 150 scripts 1 dependents

chengvt

EEM:Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data

Read raw EEM data and prepares them for further analysis.

Maintained by Vipavee Trivittayasil. Last updated 8 years ago.

42.8 match 8 stars 6.72 score 66 scripts

vincentarelbundock

countrycode:Convert Country Names and Country Codes

Standardize country names, convert them into one of 40 different coding schemes, convert between coding schemes, and assign region descriptors.

Maintained by Vincent Arel-Bundock. Last updated 3 months ago.

15.0 match 351 stars 14.80 score 6.3k scripts 119 dependents

cran

nlme:Linear and Nonlinear Mixed Effects Models

Fit and compare Gaussian linear and nonlinear mixed-effects models.

Maintained by R Core Team. Last updated 2 months ago.

fortran

16.0 match 6 stars 13.00 score 13k scripts 8.7k dependents

bioc

Biobase:Biobase: Base functions for Bioconductor

Functions that are needed by many other packages or which replace R functions.

Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.

infrastructurebioconductor-packagecore-package

12.6 match 9 stars 16.45 score 6.6k scripts 1.8k dependents

trinker

lexicon:Lexicons for Text Analysis

A collection of lexical hash tables, dictionaries, and word lists.

Maintained by Tyler Rinker. Last updated 3 years ago.

hashlexiconlookupnames-frequentstopwordstext-dictionariestext-mining

21.8 match 111 stars 8.80 score 224 scripts 25 dependents

wraff

wrMisc:Analyze Experimental High-Throughput (Omics) Data

The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions. Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc. Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates). A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc. Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values. Other functions help aligning a matrix or data.frame to a reference using partial matching or to mine an experimental setup to extract patterns of replicate samples. Many times large experimental datasets need some additional filtering, adequate functions are provided. Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too. Batch reading (or writing) of sets of files and combining data to arrays is supported, too.

Maintained by Wolfgang Raffelsberger. Last updated 7 months ago.

41.3 match 4.44 score 33 scripts 4 dependents

berndbischl

BBmisc:Miscellaneous Helper Functions for B. Bischl

Miscellaneous helper functions for and from B. Bischl and some other guys, mainly for package development.

Maintained by Bernd Bischl. Last updated 2 years ago.

15.9 match 20 stars 10.59 score 980 scripts 69 dependents

mihai-sysbio

glpkAPI:R Interface to C API of GLPK

R Interface to C API of GLPK, depends on GLPK Version >= 4.42.

Maintained by Mihail Anton. Last updated 2 years ago.

glpk

27.1 match 5.96 score 51 scripts 12 dependents

venelin

PCMBase:Simulation and Likelihood Calculation of Phylogenetic Comparative Models

Phylogenetic comparative methods represent models of continuous trait data associated with the tips of a phylogenetic tree. Examples of such models are Gaussian continuous time branching stochastic processes such as Brownian motion (BM) and Ornstein-Uhlenbeck (OU) processes, which regard the data at the tips of the tree as an observed (final) state of a Markov process starting from an initial state at the root and evolving along the branches of the tree. The PCMBase R package provides a general framework for manipulating such models. This framework consists of an application programming interface for specifying data and model parameters, and efficient algorithms for simulating trait evolution under a model and calculating the likelihood of model parameters for an assumed model and trait data. The package implements a growing collection of models, which currently includes BM, OU, BM/OU with jumps, two-speed OU as well as mixed Gaussian models, in which different types of the above models can be associated with different branches of the tree. The PCMBase package is limited to trait-simulation and likelihood calculation of (mixed) Gaussian phylogenetic models. The PCMFit package provides functionality for inference of these models to tree and trait data. The package web-site <https://venelin.github.io/PCMBase/> provides access to the documentation and other resources.

Maintained by Venelin Mitov. Last updated 10 months ago.

20.0 match 6 stars 7.56 score 85 scripts 3 dependents

tidyverse

dplyr:A Grammar of Data Manipulation

A fast, consistent tool for working with data frame like objects, both in memory and out of memory.

Maintained by Hadley Wickham. Last updated 13 days ago.

data-manipulationgrammarcpp

5.8 match 4.8k stars 24.68 score 659k scripts 7.8k dependents

henrikbengtsson

R.utils:Various Programming Utilities

Utility functions useful when programming and developing R packages.

Maintained by Henrik Bengtsson. Last updated 1 years ago.

9.7 match 63 stars 13.74 score 5.7k scripts 814 dependents

trinker

textshape:Tools for Reshaping Text

Tools that can be used to reshape and restructure text data.

Maintained by Tyler Rinker. Last updated 12 months ago.

data-reshapingmanipulationsentence-boundary-detectiontext-datatext-formatingtidy

12.9 match 50 stars 9.18 score 266 scripts 34 dependents

janmarvin

openxlsx2:Read, Write and Edit 'xlsx' Files

Simplifies the creation of 'xlsx' files by providing a high level interface to writing, styling and editing worksheets.

Maintained by Jan Marvin Garbuszus. Last updated 1 days ago.

xlsxcpp

8.6 match 138 stars 13.67 score 194 scripts 11 dependents

andysouth

rworldmap:Mapping Global Data

Enables mapping of country level and gridded user datasets.

Maintained by Andy South. Last updated 2 years ago.

9.9 match 30 stars 11.83 score 3.2k scripts 14 dependents

trinker

wakefield:Generate Random Data Sets

Generates random data sets including: data.frames, lists, and vectors.

Maintained by Tyler Rinker. Last updated 5 years ago.

data-generationwakefield

16.1 match 256 stars 7.13 score 209 scripts

gustavobio

flora:Tools for Interacting with the Brazilian Flora 2020

Tools to quickly compile taxonomic and distribution data from the Brazilian Flora 2020.

Maintained by Gustavo Carvalho. Last updated 1 years ago.

20.2 match 29 stars 5.37 score 54 scripts 1 dependents

framverse

framrsquared:FRAM Database Interface

A convenient tool for interfacing with FRAM access databases in R environments.

Maintained by Ty Garber. Last updated 2 months ago.

21.1 match 6 stars 5.06 score 9 scripts

jl5000

tidyged:Handle GEDCOM Files Using Tidyverse Principles

Create and summarise family tree GEDCOM files using tidy dataframes.

Maintained by Jamie Lendrum. Last updated 3 years ago.

17.8 match 8 stars 5.96 score 23 scripts 3 dependents

tidyverse

tibble:Simple Data Frames

Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.

Maintained by Kirill Müller. Last updated 3 months ago.

tidy-data

4.5 match 693 stars 22.82 score 47k scripts 11k dependents

skranz

gtree:gtree basic functionality to model and solve games

gtree basic functionality to model and solve games

Maintained by Sebastian Kranz. Last updated 4 years ago.

economic-experimentseconomicsgambitgame-theorynash-equilibrium

27.2 match 18 stars 3.79 score 23 scripts 1 dependents