Showing 10 of total 10 results (show query)
r-dbi
RMariaDB:Database Interface and MariaDB Driver
Implements a DBI-compliant interface to MariaDB (<https://mariadb.org/>) and MySQL (<https://www.mysql.com/>) databases.
Maintained by Kirill Müller. Last updated 20 days ago.
25.5 match 134 stars 12.36 score 792 scripts 11 dependents
nikolaus77
rocker:Database Interface Class
'R6' class interface for handling relational database connections using 'DBI' package as backend. The class allows handling of connections to e.g. PostgreSQL, MariaDB and SQLite. The purpose is having an intuitive object allowing straightforward handling of SQL databases.
Maintained by Nikolaus Pawlowski. Last updated 3 years ago.
databasedbimariadbmysqlpostgrespostgresqlr6sqlsqlite
15.9 match 5 stars 5.24 score 7 scripts
tidyverse
dbplyr:A 'dplyr' Back End for Databases
A 'dplyr' back end for databases that allows you to work with remote database tables as if they are in-memory data frames. Basic features works with any database that has a 'DBI' back end; more advanced features require 'SQL' translation to be provided by the package author.
Maintained by Hadley Wickham. Last updated 3 months ago.
3.5 match 481 stars 19.72 score 5.2k scripts 736 dependents
mlr-org
mlr3db:Data Base Backend for 'mlr3'
Extends the 'mlr3' package with a backend to transparently work with databases such as 'SQLite', 'DuckDB', 'MySQL', 'MariaDB', or 'PostgreSQL'. The package provides two additional backends: 'DataBackendDplyr' relies on the abstraction of package 'dbplyr' to interact with most DBMS. 'DataBackendDuckDB' operates on 'DuckDB' data bases and also on Apache Parquet files.
Maintained by Michel Lang. Last updated 1 years ago.
bigquerydata-backenddatabaseduckdbmachine-learningmariadbmlr3mysqlodbcpostgresqlsparksqlite
11.5 match 21 stars 4.77 score 17 scripts
bioc
ensembldb:Utilities to create and use Ensembl-based annotation databases
The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve all gene/transcript models and annotations from the database, ensembldb provides a filter framework allowing to retrieve annotations for specific entries like genes encoded on a chromosome region or transcript models of lincRNA genes. EnsDb databases built with ensembldb contain also protein annotations and mappings between proteins and their encoding transcripts. Finally, ensembldb provides functions to map between genomic, transcript and protein coordinates.
Maintained by Johannes Rainer. Last updated 5 months ago.
geneticsannotationdatasequencingcoverageannotationbioconductorbioconductor-packagesensembl
3.6 match 35 stars 14.08 score 892 scripts 108 dependents
appsilon
shiny.telemetry:'Shiny' App Usage Telemetry
Enables instrumentation of 'Shiny' apps for tracking user session events such as input changes, browser type, and session duration. These events can be sent to any of the available storage backends and analyzed using the included 'Shiny' app to gain insights about app usage and adoption.
Maintained by André Veríssimo. Last updated 3 months ago.
3.3 match 67 stars 9.69 score 29 scriptsbioc
UCSC.utils:Low-level utilities to retrieve data from the UCSC Genome Browser
A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.
Maintained by Hervé Pagès. Last updated 2 months ago.
infrastructuregenomeassemblyannotationgenomeannotationdataimportbioconductor-packagecore-package
1.8 match 1 stars 10.09 score 4 scripts 1.7k dependents
tiledb-inc
tiledb:Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays
The modern database 'TileDB' introduces a powerful on-disk format for storing and accessing any complex data based on multi-dimensional arrays. It supports dense and sparse arrays, dataframes and key-values stores, cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression, encryption and checksum filters, uses a fully multi-threaded implementation, supports parallel I/O, data versioning ('time travel'), metadata and groups. It is implemented as an embeddable cross-platform C++ library with APIs from several languages, and integrations. This package provides the R support.
Maintained by Isaiah Norton. Last updated 4 days ago.
arrayhdfss3storage-managertiledbcpp
1.1 match 107 stars 11.96 score 306 scripts 4 dependents
obiba
resourcer:Resource Resolver
A resource represents some data or a computation unit. It is described by a URL and credentials. This package proposes a Resource model with "resolver" and "client" classes to facilitate the access and the usage of the resources.
Maintained by Yannick Marcon. Last updated 2 years ago.
1.9 match 2 stars 5.10 score 42 scripts 1 dependentsr-dbi
RMySQL:Database Interface and 'MySQL' Driver for R
Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code ported from S-PLUS. A modern 'MySQL' client written in 'C++' is available from the 'RMariaDB' package.
Maintained by Jeroen Ooms. Last updated 1 months ago.
0.5 match 209 stars 13.68 score 3.7k scripts 15 dependents