Showing 103 of total 103 results (show query)
hneth
unicol:The Colors of your University
Most universities use specific color combinations to express their unique brand identity. The 'unicol' package provides the colors and color palettes of various universities for easy plotting and printing in R. We collect and provide a diverse range of color palettes for creating scientific visualizations.
Maintained by Hansjoerg Neth. Last updated 7 months ago.
brandingcolorcolor-palettescolor-schemescorporate-designuniversity-colorsvisual-identity
100.4 match 9 stars 6.58 score 10 scriptsreinhardfurrer
spam:SPArse Matrix
Set of functions for sparse matrix algebra. Differences with other sparse matrix packages are: (1) we only support (essentially) one sparse matrix format, (2) based on transparent and simple structure(s), (3) tailored for MCMC calculations within G(M)RF. (4) and it is fast and scalable (with the extension package spam64). Documentation about 'spam' is provided by vignettes included in this package, see also Furrer and Sain (2010) <doi:10.18637/jss.v036.i10>; see 'citation("spam")' for details.
Maintained by Reinhard Furrer. Last updated 2 months ago.
15.3 match 1 stars 9.26 score 420 scripts 433 dependentsedzer
spacetime:Classes and Methods for Spatio-Temporal Data
Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal matching or aggregation, retrieving coordinates, print, summary, etc.
Maintained by Edzer Pebesma. Last updated 2 months ago.
9.8 match 74 stars 13.23 score 628 scripts 69 dependentsropensci
charlatan:Make Fake Data
Make fake data that looks realistic, supporting addresses, person names, dates, times, colors, coordinates, currencies, digital object identifiers ('DOIs'), jobs, phone numbers, 'DNA' sequences, doubles and integers from distributions and within a range.
Maintained by Roel M. Hogervorst. Last updated 1 months ago.
datadatasetfake-datafakerpeer-reviewed
8.0 match 296 stars 10.06 score 180 scripts 1 dependentszhukovyuri
SUNGEO:Sub-National Geospatial Data Archive: Geoprocessing Toolkit
Tools for integrating spatially-misaligned GIS datasets. Part of the Sub-National Geospatial Data Archive System.
Maintained by Yuri M. Zhukov. Last updated 10 months ago.
21.3 match 5 stars 3.42 score 8 scriptsepiforecasts
epinowcast:Flexible Hierarchical Nowcasting
Tools to enable flexible and efficient hierarchical nowcasting of right-truncated epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes. Nowcasting, in this context, is gaining situational awareness using currently available observations and the reporting patterns of historical observations. This can be useful when tracking the spread of infectious disease in real-time: without nowcasting, changes in trends can be obfuscated by partial reporting or their detection may be delayed due to the use of simpler methods like truncation. While the package has been designed with epidemiological applications in mind, it could be applied to any set of right-truncated time-series count data.
Maintained by Sam Abbott. Last updated 11 months ago.
cmdstanreffective-reproduction-number-estimationepidemiologyinfectious-disease-surveillancenowcastingoutbreak-analysispandemic-preparednessreal-time-infectious-disease-modellingstan
8.7 match 61 stars 7.88 score 65 scriptsepinowcast
epinowcast:Flexible Hierarchical Nowcasting
Tools to enable flexible and efficient hierarchical nowcasting of right-truncated epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes. Nowcasting, in this context, is gaining situational awareness using currently available observations and the reporting patterns of historical observations. This can be useful when tracking the spread of infectious disease in real-time: without nowcasting, changes in trends can be obfuscated by partial reporting or their detection may be delayed due to the use of simpler methods like truncation. While the package has been designed with epidemiological applications in mind, it could be applied to any set of right-truncated time-series count data.
Maintained by Sam Abbott. Last updated 11 months ago.
cmdstanreffective-reproduction-number-estimationepidemiologyinfectious-disease-surveillancenowcastingoutbreak-analysispandemic-preparednessreal-time-infectious-disease-modellingstan
8.7 match 61 stars 7.79 score 71 scriptssmiljanicm
dendrometeR:Analyzing Dendrometer Data
Various functions to import, verify, process and plot high-resolution dendrometer data using daily and stem-cycle approaches as described in Deslauriers et al, 2007 <doi:10.1016/j.dendro.2007.05.003>. For more details about the package please see: Van der Maaten et al. 2016 <doi:10.1016/j.dendro.2016.06.001>.
Maintained by Marko Smiljanic. Last updated 23 days ago.
17.9 match 3.41 score 13 scriptsovgu-sh
desk:Didactic Econometrics Starter Kit
Written to help undergraduate as well as graduate students to get started with R for basic econometrics without the need to import specific functions and datasets from many different sources. Primarily, the package is meant to accompany the German textbook Auer, L.v., Hoffmann, S., Kranz, T. (2024, ISBN: 978-3-662-68263-0) from which the exercises cover all the topics from the textbook Auer, L.v. (2023, ISBN: 978-3-658-42699-6).
Maintained by Soenke Hoffmann. Last updated 11 months ago.
11.5 match 4.30 score 10 scriptsr-spatial
gstat:Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions; supports sf and stars.
Maintained by Edzer Pebesma. Last updated 10 days ago.
3.3 match 197 stars 14.78 score 4.8k scripts 57 dependentskenkellner
IPMbook:Functions and Data for the Book 'Integrated Population Models'
Provides functions and data sets to accompany the book 'Integrated Population Models: Theory and Ecological Applications with R and JAGS' by Michael Schaub and Marc Kéry (ISBN: 9780128205648).
Maintained by Ken Kellner. Last updated 1 months ago.
11.9 match 1 stars 3.95 score 177 scriptsgamlss-dev
WeatherGermany:Weather Data for Germany from the Deutscher Wetterdienst (DWD)
Weather data for all stations in Germany as provided by the Deutscher Wetterdienst (DWD). The data is pre-processed and only the observations with the highest quality flags are provided. In addition, elevation data of Germany is provided as stars object.
Maintained by Nikolaus Umlauf. Last updated 1 months ago.
19.7 match 2.30 scorebastistician
hhh4contacts:Age-Structured Spatio-Temporal Models for Infectious Disease Counts
Meyer and Held (2017) <doi:10.1093/biostatistics/kxw051> present an age-structured spatio-temporal model for infectious disease counts. The approach is illustrated in a case study on norovirus gastroenteritis in Berlin, 2011-2015, by age group, city district and week, using additional contact data from the POLYMOD survey. This package contains the data and code to reproduce the results from the paper, see 'demo("hhh4contacts")'.
Maintained by Sebastian Meyer. Last updated 5 months ago.
13.1 match 3.28 score 19 scriptsmrc-ide
EpiEstim:Estimate Time Varying Reproduction Numbers from Epidemic Curves
Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004) <doi:10.1093/aje/kwh255>.
Maintained by Anne Cori. Last updated 7 months ago.
3.5 match 95 stars 12.00 score 1.0k scripts 7 dependentscourtiol
IsoriX:Isoscape Computation and Inference of Spatial Origins using Mixed Models
Building isoscapes using mixed models and inferring the geographic origin of samples based on their isotopic ratios. This package is essentially a simplified interface to several other packages which implements a new statistical framework based on mixed models. It uses 'spaMM' for fitting and predicting isoscapes, and assigning an organism's origin depending on its isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for plotting the maps produced with 'terra' using 'lattice'.
Maintained by Alexandre Courtiol. Last updated 6 months ago.
7.4 match 14 stars 5.59 score 56 scriptsspatstat
spatstat.data:Datasets for 'spatstat' Family
Contains all the datasets for the 'spatstat' family of packages.
Maintained by Adrian Baddeley. Last updated 14 hours ago.
kernel-densitypoint-processspatial-analysisspatial-dataspatial-data-analysisspatstatstatistical-analysisstatistical-methodsstatistical-testsstatistics
3.6 match 6 stars 11.00 score 186 scripts 228 dependentsmappinguniverse
mapping:Automatic Download, Linking, Manipulating Coordinates for Maps
Maps are an important tool to visualise variables distribution across different spatial objects. The mapping process requires to link the data with coordinates and then generate the correspondent map. This package provide coordinates, linking and mapping functions for an automatic, flexible and easy approach of external functions. The package provides an easy, flexible and automatic unit. Geographical coordinates are provided in the package and automatically linked with the input data to generate maps with internal provided functions or external functions. Provide an easy, flexible and automatic approach to potentially download updated coordinates, to link statistical units with coordinates and to aggregate variables based on the spatial hierarchy of units. The object returned from the package can be used for thematic maps with the build-in functions provided in mapping or with other packages already available.
Maintained by Alessio Serafini. Last updated 1 years ago.
8.3 match 4 stars 4.79 score 31 scriptskwstat
agridat:Agricultural Datasets
Datasets from books, papers, and websites related to agriculture. Example graphics and analyses are included. Data come from small-plot trials, multi-environment trials, uniformity trials, yield monitors, and more.
Maintained by Kevin Wright. Last updated 28 days ago.
3.5 match 125 stars 11.02 score 1.7k scripts 2 dependentscszang
treeclim:Numerical Calibration of Proxy-Climate Relationships
Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology, see Zang and Biondi (2015) <doi:10.1111/ecog.01335>.
Maintained by Christian Zang. Last updated 3 months ago.
climate-relationshipsdendroclimatologydendroecologyopenblascpp
6.8 match 18 stars 5.66 score 36 scriptsstatmanrobin
Stat2Data:Datasets for Stat2
Datasets for the textbook Stat2: Modeling with Regression and ANOVA (second edition). The package also includes data for the first edition, Stat2: Building Models for a World of Data and a few functions for plotting diagnostics.
Maintained by Robin Lock. Last updated 6 years ago.
7.5 match 5 stars 4.94 score 544 scriptsflrd
standardlastprofile:Data Package for BDEW Standard Load Profiles in Electricity
Data on standard load profiles from the German Association of Energy and Water Industries (BDEW Bundesverband der Energie- und Wasserwirtschaft e.V.) in a tidy format. The data and methodology are described in VDEW (1999), "Repräsentative VDEW-Lastprofile", <https://www.bdew.de/media/documents/1999_Repraesentative-VDEW-Lastprofile.pdf>. The package also offers an interface for generating a standard load profile over a user-defined period. For the algorithm, see VDEW (2000), "Anwendung der Repräsentativen VDEW-Lastprofile step-by-step", <https://www.bdew.de/media/documents/2000131_Anwendung-repraesentativen_Lastprofile-Step-by-step.pdf>.
Maintained by Markus Döring. Last updated 8 months ago.
10.0 match 1 stars 3.70 score 4 scriptscimentadaj
perccalc:Estimate Percentiles from an Ordered Categorical Variable
An implementation of two functions that estimate values for percentiles from an ordered categorical variable as described by Reardon (2011, isbn:978-0-87154-372-1). One function estimates percentile differences from two percentiles while the other returns the values for every percentile from 1 to 100.
Maintained by Jorge Cimentada. Last updated 5 years ago.
6.7 match 4 stars 5.53 score 14 scriptsropensci
webchem:Chemical Information from the Web
Chemical information from around the web. This package interacts with a suite of web services for chemical information. Sources include: Alan Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver, ChEBI, Chemical Translation Service, ChemSpider, ETOX, Flavornet, NIST Chemistry WebBook, OPSIN, PubChem, SRS, Wikidata.
Maintained by Tamás Stirling. Last updated 3 months ago.
cas-numberchemical-informationchemspideridentifierropensciwebscraping
3.4 match 165 stars 10.31 score 173 scripts 10 dependentsai4ci
ggoutbreak:Estimate Incidence, Proportions and Exponential Growth Rates
Simple statistical models and visualisations for calculating the incidence, proportion, exponential growth rate, and reproduction number of infectious disease case time series. This toolkit was largely developed during the COVID-19 pandemic.
Maintained by Robert Challen. Last updated 1 months ago.
7.9 match 1 stars 4.30 scorecovid19datahub
COVID19:COVID-19 Data Hub
Unified datasets for a better understanding of COVID-19.
Maintained by Emanuele Guidotti. Last updated 27 days ago.
2019-ncovcoronaviruscovid-19covid-datacovid19-data
3.0 match 252 stars 11.08 score 265 scriptscran
vcd:Visualizing Categorical Data
Visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was package was originally inspired by the book "Visualizing Categorical Data" by Michael Friendly and is now the main support package for a new book, "Discrete Data Analysis with R" by Michael Friendly and David Meyer (2015).
Maintained by David Meyer. Last updated 6 months ago.
4.0 match 5 stars 8.19 score 87 dependentslalvarezmat
EpiInvert:Variational Techniques in Epidemiology
Using variational techniques we address some epidemiological problems as the incidence curve decomposition by inverting the renewal equation as described in Alvarez et al. (2021) <doi:10.1073/pnas.2105112118> and Alvarez et al. (2022) <doi:10.3390/biology11040540> or the estimation of the functional relationship between epidemiological indicators. We also propose a learning method for the short time forecast of the trend incidence curve as described in Morel et al. (2022) <doi:10.1101/2022.11.05.22281904>.
Maintained by Luis Alvarez. Last updated 1 years ago.
9.9 match 3 stars 3.18 score 3 scriptsmatthieustigler
partsm:Periodic Autoregressive Time Series Models
Basic functions to fit and predict periodic autoregressive time series models. These models are discussed in the book P.H. Franses (1996) "Periodicity and Stochastic Trends in Economic Time Series", Oxford University Press. Data set analyzed in that book is also provided. NOTE: the package was orphaned during several years. It is now only maintained, but no major enhancements are expected, and the maintainer cannot provide any support.
Maintained by Matthieu Stigler. Last updated 4 years ago.
6.8 match 3 stars 4.57 score 25 scriptsboost-r
FDboost:Boosting Functional Regression Models
Regression models for functional data, i.e., scalar-on-function, function-on-scalar and function-on-function regression models, are fitted by a component-wise gradient boosting algorithm. For a manual on how to use 'FDboost', see Brockhaus, Ruegamer, Greven (2017) <doi:10.18637/jss.v094.i10>.
Maintained by David Ruegamer. Last updated 3 months ago.
boostingboosting-algorithmsfunction-on-function-regressionfunction-on-scalar-regressionmachine-learningscalar-on-function-regressionvariable-selection
3.8 match 17 stars 8.00 score 98 scriptsandreash0
leafdown:Provides Drill Down Functionality for 'leaflet' Choropleths
Provides drill down functionality for 'leaflet' choropleths in 'shiny' apps.
Maintained by Andreas Hofheinz. Last updated 2 years ago.
7.2 match 3.87 score 49 scriptsepiforecasts
covidregionaldata:Subnational Data for COVID-19 Epidemiology
An interface to subnational and national level COVID-19 data sourced from both official sources, such as Public Health England in the UK, and from other COVID-19 data collections, including the World Health Organisation (WHO), European Centre for Disease Prevention and Control (ECDC), John Hopkins University (JHU), Google Open Data and others. Designed to streamline COVID-19 data extraction, cleaning, and processing from a range of data sources in an open and transparent way. This allows users to inspect and scrutinise the data, and tools used to process it, at every step. For all countries supported, data includes a daily time-series of cases. Wherever available data is also provided for deaths, hospitalisations, and tests. National level data are also supported using a range of sources.
Maintained by Sam Abbott. Last updated 3 years ago.
covid-19dataopen-sciencer6regional-data
4.7 match 37 stars 5.67 score 121 scriptscran
REAT:Regional Economic Analysis Toolbox
Collection of models and analysis methods used in regional and urban economics and (quantitative) economic geography, e.g. measures of inequality, regional disparities and convergence, regional specialization as well as accessibility and spatial interaction models.
Maintained by Thomas Wieland. Last updated 4 years ago.
7.3 match 3 stars 3.62 score 140 scriptsbiostats-dev
ggsurveillance:Tools for Outbreak Investigation/Infectious Disease Surveillance
Create epicurves or epigantt charts in 'ggplot2'. Prepare data for visualisation or other reporting for infectious disease surveillance and outbreak investigation. Includes tidy functions to solve date based transformations for common reporting tasks, like (A) seasonal date alignment for respiratory disease surveillance, (B) date-based case binning based on specified time intervals like isoweek, epiweek, month and more, (C) automated detection and marking of the new year based on the date/datetime axis of the 'ggplot2'. An introduction on how to use epicurves can be found on the US CDC website (2012, <https://www.cdc.gov/training/quicklearns/epimode/index.html>).
Maintained by Alexander Bartel. Last updated 14 days ago.
epidemiologyinfectious-disease-surveillanceinfectious-diseasesoutbreaks
4.8 match 2 stars 5.31 scorereconverse
outbreaks:A Collection of Disease Outbreak Data
Empirical or simulated disease outbreak data, provided either as RData or as text files.
Maintained by Finlay Campbell. Last updated 2 years ago.
3.8 match 51 stars 6.70 score 282 scriptsarne-henningsen
micEcon:Microeconomic Analysis and Modelling
Various tools for microeconomic analysis and microeconomic modelling, e.g. estimating quadratic, Cobb-Douglas and Translog functions, calculating partial derivatives and elasticities of these functions, and calculating Hessian matrices, checking curvature and preparing restrictions for imposing monotonicity of Translog functions.
Maintained by Arne Henningsen. Last updated 3 years ago.
7.3 match 3 stars 3.18 score 39 scripts 3 dependentssumtxt
wiesbaden:Access Databases from the Federal Statistical Office of Germany
Retrieve and import data from different databases of the Federal Statistical Office of Germany (DESTATIS) using their SOAP XML web service <https://www-genesis.destatis.de/>.
Maintained by Moritz Marbach. Last updated 8 months ago.
3.4 match 52 stars 6.55 score 17 scriptsimpaug
UpAndDownPlots:Displays Percentage and Absolute Changes
Displays percentage changes by height and absolute changes by area for up to three nested or non-nested levels. The plots visualise changes in indices and markets, showing how the changes for sectors or for individual components contribute to the overall change. Data can be classified by up to three levels of grouping variables in a layered, hierarchical plot. Each level can be ordered in several ways including by baseline, by percentage change, and by absolute change. The vignettes give examples.
Maintained by Antony Unwin. Last updated 12 months ago.
6.8 match 3.30 score 6 scriptscorrelaid
restatis:R Wrapper to Access a Wide Range of Germany's Federal Statistical System Databases Based on the GENESIS Web Service RESTful API of the German Federal Statistical Office (Statistisches Bundesamt/Destatis)
A RESTful API wrapper for accessing the GENESIS database of the German Federal Statistical Office (Destatis) as well as its Census Database and the database of Germany's regional statistics. Supports data search functions, credential management, result caching, and handling remote background jobs for large datasets.
Maintained by Yannik Buhl. Last updated 6 days ago.
3.1 match 22 stars 7.03 score 11 scriptscran
flux:Flux Rate Calculation from Dynamic Closed Chamber Measurements
Functions for the calculation of greenhouse gas flux rates from closed chamber concentration measurements. The package follows a modular concept: Fluxes can be calculated in just two simple steps or in several steps if more control in details is wanted. Additionally plot and preparation functions as well as functions for modelling gpp and reco are provided.
Maintained by Gerald Jurasinski. Last updated 3 years ago.
6.6 match 2 stars 3.21 score 3 dependentslightbluetitan
crimedatasets:A Comprehensive Collection of Crime-Related Datasets
A comprehensive collection of datasets exclusively focused on crimes, criminal activities, and related topics. This package serves as a valuable resource for researchers, analysts, and students interested in crime analysis, criminology, social and economic studies related to criminal behavior. Datasets span global and local contexts, with a mix of tabular and spatial data.
Maintained by Renzo Caceres Rossi. Last updated 3 months ago.
4.0 match 8 stars 4.90 score 3 scriptsmvogel78
childsds:Data and Methods Around Reference Values in Pediatrics
Calculation of standard deviation scores and percentiles adduced from different standards (WHO, UK, Germany, Italy, China, etc). Also, references for laboratory values in children and adults are available, e.g., serum lipids, iron-related blood parameters, IGF, liver enzymes. See package documentation for full list.
Maintained by Mandy Vogel. Last updated 2 months ago.
6.8 match 2.83 score 51 scriptsfgazzelloni
hmsidwR:Health Metrics and the Spread of Infectious Diseases
A collection of datasets and supporting functions accompanying Health Metrics and the Spread of Infectious Diseases by Federica Gazzelloni (2024). This package provides data for health metrics calculations, including Disability-Adjusted Life Years (DALYs), Years of Life Lost (YLLs), and Years Lived with Disability (YLDs), as well as additional tools for analyzing and visualizing health data. Federica Gazzelloni (2024) <doi:10.5281/zenodo.10818338>.
Maintained by Federica Gazzelloni. Last updated 2 months ago.
deathshealth-datainfectious-diseaseslifeexpectancy
3.4 match 4 stars 5.48 score 6 scriptszhuwang46
mpath:Regularized Linear Models
Algorithms compute robust estimators for loss functions in the concave convex (CC) family by the iteratively reweighted convex optimization (IRCO), an extension of the iteratively reweighted least squares (IRLS). The IRCO reduces the weight of the observation that leads to a large loss; it also provides weights to help identify outliers. Applications include robust (penalized) generalized linear models and robust support vector machines. The package also contains penalized Poisson, negative binomial, zero-inflated Poisson, zero-inflated negative binomial regression models and robust models with non-convex loss functions. Wang et al. (2014) <doi:10.1002/sim.6314>, Wang et al. (2015) <doi:10.1002/bimj.201400143>, Wang et al. (2016) <doi:10.1177/0962280214530608>, Wang (2021) <doi:10.1007/s11749-021-00770-2>, Wang (2020) <arXiv:2010.02848>.
Maintained by Zhu Wang. Last updated 3 years ago.
2.7 match 1 stars 6.67 score 131 scripts 4 dependentsepiforecasts
forecast.vocs:Forecast Case and Sequence Notifications using Variant of Concern Strain Dynamics
Contains models and tools to produce short-term forecasts for both case and sequence notifications assuming circulation of either one or two variants. Tools are also provided to allow the evaluation of the use of sequence data for short-term forecasts in both real-world settings and in user generated scenarios.
Maintained by Sam Abbott. Last updated 2 years ago.
3.4 match 8 stars 5.25 score 22 scriptsrozetasimonovska
SDPDmod:Spatial Dynamic Panel Data Modeling
Spatial model calculation for static and dynamic panel data models, weights matrix creation and Bayesian model comparison. Bayesian model comparison methods were described by 'LeSage' (2014) <doi:10.1016/j.spasta.2014.02.002>. The 'Lee'-'Yu' transformation approach is described in 'Yu', 'De Jong' and 'Lee' (2008) <doi:10.1016/j.jeconom.2008.08.002>, 'Lee' and 'Yu' (2010) <doi:10.1016/j.jeconom.2009.08.001> and 'Lee' and 'Yu' (2010) <doi:10.1017/S0266466609100099>.
Maintained by Rozeta Simonovska. Last updated 11 months ago.
3.6 match 5 stars 4.98 score 19 scriptsforest-economics-goettingen
woodValuationDE:Wood Valuation Germany
Monetary valuation of wood in German forests (stumpage values), including estimations of harvest quantities, wood revenues, and harvest costs. The functions are sensitive to tree species, mean diameter of the harvested trees, stand quality, and logging method. The functions include estimations for the consequences of disturbances on revenues and costs. The underlying assortment tables are taken from Offer and Staupendahl (2018) with corresponding functions for salable and skidded volume derived in Fuchs et al. (2023). Wood revenue and harvest cost functions were taken from v. Bodelschwingh (2018). The consequences of disturbances refer to Dieter (2001), Moellmann and Moehring (2017), and Fuchs et al. (2022a, 2022b). For the full references see documentation of the functions, package README, and Fuchs et al. (2023). Apart from Dieter (2001) and Moellmann and Moehring (2017), all functions and factors are based on data from HessenForst, the forest administration of the Federal State of Hesse in Germany.
Maintained by Jasper M. Fuchs. Last updated 8 months ago.
5.4 match 2 stars 3.30 score 2 scriptsrnuske
et.nwfva:Forest Yield Tables for Northwest Germany and their Application
The new yield tables developed by the Northwest German Forest Research Institute (NW-FVA) provide a forest management tool for the five main commercial tree species oak, beech, spruce, Douglas-fir and pine for northwestern Germany. The new method applied for deriving yield tables combines measurements of growth and yield trials with growth simulations using a state-of-the-art single-tree growth simulator. By doing so, the new yield tables reflect the current increment level and the recommended graduated thinning from above is the underlying management concept. The yield tables are provided along with methods for deriving the site index and for interpolating between age and site indices and extrapolating beyond age and site index ranges. The inter-/extrapolations are performed traditionally by the rule of proportion or with a functional approach.
Maintained by Robert Nuske. Last updated 14 days ago.
baumartenertragstafelnforstwirtschaft
3.4 match 4 stars 5.08 score 10 scriptsrainers48
tsapp:Time Series, Analysis and Application
Accompanies the book Rainer Schlittgen and Cristina Sattarhoff (2020) <https://www.degruyter.com/view/title/575978> "Angewandte Zeitreihenanalyse mit R, 4. Auflage" . The package contains the time series and functions used therein. It was developed over many years teaching courses about time series analysis.
Maintained by Rainer Schlittgen. Last updated 3 years ago.
17.4 match 1.00 score 1 scriptsproject-gen3sis
gen3sis:General Engine for Eco-Evolutionary Simulations
Contains an engine for spatially-explicit eco-evolutionary mechanistic models with a modular implementation and several support functions. It allows exploring the consequences of ecological and macroevolutionary processes across realistic or theoretical spatio-temporal landscapes on biodiversity patterns as a general term. Reference: Oskar Hagen, Benjamin Flueck, Fabian Fopp, Juliano S. Cabral, Florian Hartig, Mikael Pontarp, Thiago F. Rangel, Loic Pellissier (2021) "gen3sis: A general engine for eco-evolutionary simulations of the processes that shape Earth's biodiversity" <doi:10.1371/journal.pbio.3001340>.
Maintained by Oskar Hagen. Last updated 1 years ago.
biodiversityecologyevolutionmechanisticmodelmodelingsimulationcpp
2.3 match 29 stars 7.56 score 69 scriptsnoeliaof
SEI:Calculating Standardised Indices
Convert a time series of observations to a time series of standardised indices that can be used to monitor variables on a common and probabilistically interpretable scale. The indices can be aggregated and rescaled to different time scales, visualised using plot capabilities, and calculated using a range of distributions. This includes flexible non-parametric and non-stationary methods.
Maintained by Sam Allen. Last updated 8 months ago.
3.5 match 3 stars 4.86 score 12 scriptsjmanitz
samplingbook:Survey Sampling Procedures
Sampling procedures from the book 'Stichproben - Methoden und praktische Umsetzung mit R' by Goeran Kauermann and Helmut Kuechenhoff (2010).
Maintained by Juliane Manitz. Last updated 4 years ago.
sampling-methodssampling-procedures
3.5 match 2 stars 4.78 score 54 scriptsflorianjansen
eHOF:Extended HOF (Huisman-Olff-Fresco) Models
Extended and enhanced hierarchical logistic regression models (called Huisman-Olff-Fresco in biology, see Huisman et al. 1993 Journal of Vegetation Science <doi:10.1111/jvs.12050>) models. Response curves along one-dimensional gradients including no response, monotone, plateau, unimodal and bimodal models.
Maintained by Florian Jansen. Last updated 3 months ago.
5.1 match 3.16 score 24 scriptssumtxt
ags:Crosswalk Municipality and District Statistics in Germany
Construct time series for Germany's municipalities (Gemeinden) and districts (Kreise) using a annual crosswalk constructed by the Federal Office for Building and Regional Planning (BBSR).
Maintained by Moritz Marbach. Last updated 11 months ago.
3.5 match 8 stars 4.60 score 3 scriptsfreezenik
R2BayesX:Estimate Structured Additive Regression Models with 'BayesX'
An R interface to estimate structured additive regression (STAR) models with 'BayesX'.
Maintained by Nikolaus Umlauf. Last updated 1 years ago.
4.5 match 1 stars 3.55 score 118 scripts 1 dependentsedonnachie
ICD10gm:Metadata Processing for the German Modification of the ICD-10 Coding System
Provides convenient access to the German modification of the International Classification of Diagnoses, 10th revision (ICD-10-GM). It provides functionality to aid in the identification, specification and historisation of ICD-10 codes. Its intended use is the analysis of routinely collected data in the context of epidemiology, medical research and health services research. The underlying metadata are released by the German Institute for Medical Documentation and Information <https://www.dimdi.de>, and are redistributed in accordance with their license.
Maintained by Ewan Donnachie. Last updated 1 years ago.
bfarmcharlsoncomorbiditiesdiagnosesdimdiicd-10metadataroutinedatenversorgungsforschung
3.0 match 10 stars 5.30 score 20 scriptsvochr
TapeR:Flexible Tree Taper Curves Based on Semiparametric Mixed Models
Implementation of functions for fitting taper curves (a semiparametric linear mixed effects taper model) to diameter measurements along stems. Further functions are provided to estimate the uncertainty around the predicted curves, to calculate timber volume (also by sections) and marginal (e.g., upper) diameters. For cases where tree heights are not measured, methods for estimating additional variance in volume predictions resulting from uncertainties in tree height models (tariffs) are provided. The example data include the taper curve parameters for Norway spruce used in the 3rd German NFI fitted to 380 trees and a subset of section-wise diameter measurements of these trees. The functions implemented here are detailed in Kublin, E., Breidenbach, J., Kaendler, G. (2013) <doi:10.1007/s10342-013-0715-0>.
Maintained by Christian Vonderach. Last updated 1 years ago.
3.4 match 4.38 score 16 scripts 1 dependentscran
gamair:Data for 'GAMs: An Introduction with R'
Data sets and scripts used in the book 'Generalized Additive Models: An Introduction with R', Wood (2006,2017) CRC.
Maintained by Simon Wood. Last updated 6 years ago.
6.0 match 2.43 score 162 scriptscysouw
qlcVisualize:Visualization for Quantitative Language Comparison
Collection of visualizations as used in quantitative language comparison. Currently implemented are visualisations dealing nominal data with multiple levels ("level map" and "factor map"), and assistance for making weighted geographical Voronoi-maps ("weighted map").
Maintained by Michael Cysouw. Last updated 6 months ago.
3.4 match 4.03 score 24 scriptspik-piam
mredgebuildings:Prepare data to be used by the EDGE-Buildings model
Prepare data to be used by the EDGE-Buildings model.
Maintained by Robin Hasse. Last updated 2 days ago.
3.5 match 3.72 scorebhaskarvk
tilegramsR:R Spatial Data for Tilegrams
R spatial objects for Tilegrams. Tilegrams are tiled maps where the region size is proportional to the certain characteristics of the dataset.
Maintained by Bhaskar Karambelkar. Last updated 3 years ago.
2.0 match 52 stars 6.03 score 41 scriptsesmucler
gdpc:Generalized Dynamic Principal Components
Functions to compute the Generalized Dynamic Principal Components introduced in Peña and Yohai (2016) <DOI:10.1080/01621459.2015.1072542>. The implementation includes an automatic procedure proposed in Peña, Smucler and Yohai (2020) <DOI:10.18637/jss.v092.c02> for the identification of both the number of lags to be used in the generalized dynamic principal components as well as the number of components required for a given reconstruction accuracy.
Maintained by Ezequiel Smucler. Last updated 1 years ago.
3.3 match 5 stars 3.57 score 15 scriptskainhofer
MortalityTables:A Framework for Various Types of Mortality / Life Tables
Classes to implement, analyze and plot cohort life tables for actuarial calculations. Birth-year dependent cohort mortality tables using a yearly trend to extrapolate from a base year are implemented, as well as period life table, cohort life tables using an age shift, and merged life tables. Additionally, several data sets from various countries are included to provide widely-used tables out of the box.
Maintained by Reinhold Kainhofer. Last updated 1 years ago.
2.0 match 1 stars 5.70 score 84 scripts 2 dependentscran
expectreg:Expectile and Quantile Regression
Expectile and quantile regression of models with nonlinear effects e.g. spatial, random, ridge using least asymmetric weighed squares / absolutes as well as boosting; also supplies expectiles for common distributions.
Maintained by Fabian Otto-Sobotka. Last updated 1 years ago.
3.6 match 2 stars 3.08 score 2 dependentsweiserc
mvQuad:Methods for Multivariate Quadrature
Provides methods to construct multivariate grids, which can be used for multivariate quadrature. This grids can be based on different quadrature rules like Newton-Cotes formulas (trapezoidal-, Simpson's- rule, ...) or Gauss quadrature (Gauss-Hermite, Gauss-Legendre, ...). For the construction of the multidimensional grid the product-rule or the combination- technique can be applied.
Maintained by Constantin Weiser. Last updated 9 years ago.
1.8 match 3 stars 6.15 score 45 scripts 7 dependentsiwugermany
clidamonger:Monthly Climate Data for Germany, Usable for Heating and Cooling Calculations
This data package contains monthly climate data in Germany, it can be used for heating and cooling calculations (external temperature, heating / cooling days, solar radiation).
Maintained by Jens Calisti. Last updated 1 months ago.
3.3 match 2 stars 3.30 score 3 scriptsmpi-bgc-functional-biogeography
rtry:Preprocessing Plant Trait Data
Designed to support the application of plant trait data providing easy applicable functions for the basic steps of data preprocessing, e.g. data import, data exploration, selection of columns and rows, excluding trait data according to different attributes, geocoding, long- to wide-table transformation, and data export. 'rtry' was initially developed as part of the TRY R project to preprocess trait data received via the TRY database.
Maintained by Olee Hoi Ying Lam. Last updated 2 years ago.
1.5 match 24 stars 5.94 score 24 scriptsdschulz13
smoots:Nonparametric Estimation of the Trend and Its Derivatives in TS
The nonparametric trend and its derivatives in equidistant time series (TS) with short-memory stationary errors can be estimated. The estimation is conducted via local polynomial regression using an automatically selected bandwidth obtained by a built-in iterative plug-in algorithm or a bandwidth fixed by the user. A Nadaraya-Watson kernel smoother is also built-in as a comparison. With version 1.1.0, a linearity test for the trend function, forecasting methods and backtesting approaches are implemented as well. The smoothing methods of the package are described in Feng, Y., Gries, T., and Fritz, M. (2020) <doi:10.1080/10485252.2020.1759598>.
Maintained by Dominik Schulz. Last updated 2 years ago.
3.4 match 2.65 score 6 scripts 3 dependentscran
rriskDistributions:Fitting Distributions to Given Data or Known Quantiles
Collection of functions for fitting distributions to given data or by known quantiles. Two main functions fit.perc() and fit.cont() provide users a GUI that allows to choose a most appropriate distribution without any knowledge of the R syntax. Note, this package is a part of the 'rrisk' project.
Maintained by Matthias Greiner. Last updated 8 years ago.
2.8 match 2.94 score 1 dependentsdschulz13
esemifar:Smoothing Long-Memory Time Series
The nonparametric trend and its derivatives in equidistant time series (TS) with long-memory errors can be estimated. The estimation is conducted via local polynomial regression using an automatically selected bandwidth obtained by a built-in iterative plug-in algorithm or a bandwidth fixed by the user. The smoothing methods of the package are described in Letmathe, S., Beran, J. and Feng, Y., (2023) <doi:10.1080/03610926.2023.2276049>.
Maintained by Dominik Schulz. Last updated 10 months ago.
3.3 match 1 stars 2.48 score 1 scripts 1 dependentsmarkusboenn
POD:Probability of Detection for Qualitative PCR Methods
This tool computes the probability of detection (POD) curve and the limit of detection (LOD), i.e. the number of copies of the target DNA sequence required to ensure a 95 % probability of detection (LOD95). Other quantiles of the LOD can be specified. This is a reimplementation of the mathematical-statistical modelling of the validation of qualitative polymerase chain reaction (PCR) methods within a single laboratory as provided by the commercial tool 'PROLab' <http://quodata.de/>. The modelling itself has been described by Uhlig et al. (2015) <doi:10.1007/s00769-015-1112-9>.
Maintained by Markus Boenn. Last updated 5 years ago.
1.7 match 4.70 score 10 scriptsmiracum
DIZutils:Utilities for 'DIZ' R Package Development
Utility functions used for the R package development infrastructure inside the data integration centers ('DIZ') to standardize and facilitate repetitive tasks such as setting up a database connection or issuing notification messages and to avoid redundancy.
Maintained by Jonathan M. Mang. Last updated 4 months ago.
1.5 match 3 stars 5.03 score 5 scripts 2 dependentscran
BHAI:Estimate the Burden of Healthcare-Associated Infections
Provides an approach which is based on the methodology of the Burden of Communicable Diseases in Europe (BCoDE) and can be used for large and small samples such as individual countries. The Burden of Healthcare-Associated Infections (BHAI) is estimated in disability-adjusted life years, number of infections as well as number of deaths per year. Results can be visualized with various plotting functions and exported into tables.
Maintained by Benedikt Zacher. Last updated 5 years ago.
7.5 match 1.00 scoredatscimema
LinRegInteractive:Interactive Interpretation of Linear Regression Models
Interactive visualization of effects, response functions and marginal effects for different kinds of regression models. In this version linear regression models, generalized linear models, generalized additive models and linear mixed-effects models are supported. Major features are the interactive approach and the handling of the effects of categorical covariates: if two or more factors are used as covariates every combination of the levels of each factor is treated separately. The automatic calculation of marginal effects and a number of possibilities to customize the graphical output are useful features as well.
Maintained by Martin Meermeyer. Last updated 5 years ago.
3.5 match 2.00 scorebioc
pcaMethods:A collection of PCA methods
Provides Bayesian PCA, Probabilistic PCA, Nipals PCA, Inverse Non-Linear PCA and the conventional SVD PCA. A cluster based method for missing value estimation is included for comparison. BPCA, PPCA and NipalsPCA may be used to perform PCA on incomplete data as well as for accurate missing value estimation. A set of methods for printing and plotting the results is also provided. All PCA methods make use of the same data structure (pcaRes) to provide a common interface to the PCA results. Initiated at the Max-Planck Institute for Molecular Plant Physiology, Golm, Germany.
Maintained by Henning Redestig. Last updated 5 months ago.
0.5 match 49 stars 13.10 score 538 scripts 73 dependentsmiracum
DIZtools:Lightweight Utilities for 'DIZ' R Package Development
Lightweight utility functions used for the R package development infrastructure inside the data integration centers ('DIZ') to standardize and facilitate repetitive tasks such as setting up a database connection or issuing notification messages and to avoid redundancy.
Maintained by Jonathan M. Mang. Last updated 1 years ago.
1.5 match 3 stars 4.13 score 2 scripts 3 dependentsimpaug
GmooG:Datasets for the Book 'Getting (more out of) Graphics'
Datasets analysed in the book Antony Unwin (2024, ISBN:978-0367674007) "Getting (more out of) Graphics".
Maintained by Antony Unwin. Last updated 7 months ago.
3.6 match 1.70 scorejoundso
cleaR:Clean the R Console and Environment
Small package to clean the R console and the R environment with the call of just one function.
Maintained by Jonathan M. Mang. Last updated 1 years ago.
1.6 match 3.78 score 3 scripts 4 dependentskwb-r
kwb.datetime:Functions for date/time objects
Functions for date/time objects, e.g. functions to convert timestamps between different time zones. Correctness for some functions still to be verified!
Maintained by Hauke Sonnenberg. Last updated 4 years ago.
1.2 match 4.98 score 5 scripts 32 dependentsfelixhenninger
cookiecutter:Generate Project Files from a Template
Generate project files and directories following a pre-made template. You can specify variables to customize file names and content, and flexibly adapt the template to your needs. 'cookiecutter' for 'R' implements a subset of the excellent 'cookiecutter' package for the 'Python' programming language (<https://github.com/cookiecutter/>), and aims to be largely compatible with the original 'cookiecutter' template format.
Maintained by Felix Henninger. Last updated 1 years ago.
reproducibilityresearch-software-engineering
1.6 match 5 stars 3.40 score 4 scriptsycroissant
pder:Panel Data Econometrics with R
Data sets for the Panel Data Econometrics with R <doi:10.1002/9781119504641> book.
Maintained by Yves Croissant. Last updated 3 years ago.
3.4 match 1.36 score 15 scriptsbgctw
REddyProcNCDF:Reading Data from NetCDF Files for 'REddyProc'
Extension to 'REddyProc' that allows reading data from netCDF files.
Maintained by Thomas Wutzler. Last updated 7 years ago.
1.6 match 2.70 score 1 scriptskjhealy
gssrdoc:Document General Social Survey Variable
The General Social Survey (GSS) is a long-running, mostly annual survey of US households. It is administered by the National Opinion Research Center (NORC). This package contains the a tibble with information on the survey variables, together with every variable documented as an R help page. For more information on the GSS see \url{http://gss.norc.org}.
Maintained by Kieran Healy. Last updated 11 months ago.
1.8 match 2.28 score 38 scriptsbioc
GlobalAncova:Global test for groups of variables via model comparisons
The association between a variable of interest (e.g. two groups) and the global pattern of a group of variables (e.g. a gene set) is tested via a global F-test. We give the following arguments in support of the GlobalAncova approach: After appropriate normalisation, gene-expression-data appear rather symmetrical and outliers are no real problem, so least squares should be rather robust. ANCOVA with interaction yields saturated data modelling e.g. different means per group and gene. Covariate adjustment can help to correct for possible selection bias. Variance homogeneity and uncorrelated residuals cannot be expected. Application of ordinary least squares gives unbiased, but no longer optimal estimates (Gauss-Markov-Aitken). Therefore, using the classical F-test is inappropriate, due to correlation. The test statistic however mirrors deviations from the null hypothesis. In combination with a permutation approach, empirical significance levels can be approximated. Alternatively, an approximation yields asymptotic p-values. The framework is generalized to groups of categorical variables or even mixed data by a likelihood ratio approach. Closed and hierarchical testing procedures are supported. This work was supported by the NGFN grant 01 GR 0459, BMBF, Germany and BMBF grant 01ZX1309B, Germany.
Maintained by Manuela Hummel. Last updated 5 months ago.
microarrayonechanneldifferentialexpressionpathwaysregression
0.8 match 5.32 score 9 scripts 1 dependentscran
QCApro:Advanced Functionality for Performing and Evaluating Qualitative Comparative Analysis
Provides advanced functionality for performing configurational comparative research with Qualitative Comparative Analysis (QCA), including crisp-set, multi-value, and fuzzy-set QCA. It also offers advanced tools for sensitivity diagnostics and methodological evaluations of QCA.
Maintained by Alrik Thiem. Last updated 7 years ago.
3.8 match 1 stars 1.00 scoresvenja12
ExtrPatt:Spatial Dependencies and Indices for Extremes
An implementation of 1) the tail pairwise dependence matrix (TPDM) as described in Jiang & Cooley (2020) <doi:10.1175/JCLI-D-19-0413.1> 2) the extremal pattern index (EPI) as described in Szemkus & Friederichs ('Spatial patterns and indices for heatwave and droughts over Europe using a decomposition of extremal dependency'; submitted to ASCMO 2023).
Maintained by Svenja Szemkus. Last updated 1 years ago.
3.8 match 1.00 scorecran
wflo:Data Set and Helper Functions for Wind Farm Layout Optimization Problems
Provides a convenient data set, a set of helper functions, and a benchmark function for economically (profit) driven wind farm layout optimization. This enables researchers in the field of the NP-hard (non-deterministic polynomial-time hard) problem of wind farm layout optimization to focus on their optimization methodology contribution and also provides a realistic benchmark setting for comparability among contributions. See Croonenbroeck, Carsten & Hennecke, David (2020) <doi:10.1016/j.energy.2020.119244>.
Maintained by Carsten Croonenbroeck. Last updated 12 months ago.
1.8 match 2.00 scorejohannesfriedrich
hystReet:Get Pedestrian Frequency Data from the 'Hystreet' Project
An R API wrapper for the 'Hystreet' project <https://hystreet.com>. 'Hystreet' provides pedestrian counts in different cities in Germany.
Maintained by Johannes Friedrich. Last updated 2 months ago.
apibigdatahystreetpedestrian-detectionwrapper
0.5 match 13 stars 5.29 score 9 scriptschgrl
rdnb:R Interface to the 'Deutsche Nationalbibliothek (German National Library) API'
A wrapper for the 'Deutsche Nationalbibliothek (German National Library) API', available at <https://www.dnb.de/EN/Home/home_node.html>. The German National Library is the German central archival library, collecting, archiving, bibliographically classifying all German and German-language publications, foreign publications about Germany, translations of German works, and the works of German-speaking emigrants published abroad between 1933 and 1945.
Maintained by Christian Graul. Last updated 1 years ago.
0.5 match 2 stars 4.00 score 9 scriptsimranshakoor
DDPM:Data Sets for Discrete Probability Models
A wide collection of univariate discrete data sets from various applied domains related to distribution theory. The functions allow quick, easy, and efficient access to 100 univariate discrete data sets. The data are related to different applied domains, including medical, reliability analysis, engineering, manufacturing, occupational safety, geological sciences, terrorism, psychology, agriculture, environmental sciences, road traffic accidents, demography, actuarial science, law, and justice. The documentation, along with associated references for further details and uses, is presented.
Maintained by Muhammad Imran. Last updated 2 years ago.
1.6 match 1.00 scoreottlngr
bundesligR:All Final Tables of the Bundesliga
All final tables of Germany's highest football (soccer!) league, the Bundesliga. Contains data from 1964 to 2016.
Maintained by Philipp Ottolinger. Last updated 9 years ago.
0.5 match 1 stars 2.70 scorebrry
dwdradar:Read Binary Radar Files from 'DWD' (German Weather Service)
The 'DWD' provides gridded radar data for Germany in binary format. 'dwdradar' reads these files and enables a fast conversion into numerical format.
Maintained by Berry Boessenkool. Last updated 5 months ago.
0.5 match 1 stars 2.70 score 2 scriptsbachfisch
PHENTHAUproc:Phenology Modelling of Thaumetopoea Processionea
Methods to calculate and present 'PHENTHAUproc', an early warning and decision support system for hazard assessment and control of oak processionary moth (OPM) using local and spatial temperature data. It was created by Halbig et al. 2024 (<doi:10.1016/j.foreco.2023.121525>) at FVA (<https://www.fva-bw.de/en/homepage/>) Forest Research Institute Baden-Wuerttemberg, Germany and at BOKU - University of Natural Ressources and Life Sciences, Vienna, Austria.
Maintained by Lorenz Bachfischer. Last updated 9 months ago.
0.5 match 2.70 score 3 scriptscran
EUfootball:Football Match Data of European Leagues
Contains match results from seven European men's football leagues, namely Premier League (England), Ligue 1 (France), Bundesliga (Germany), Serie A (Italy), Primera Division (Spain), Eredivisie (The Netherlands), Super Lig (Turkey). Includes Seasons 2010/2011 until 2019/2020 and a set of interesting covariates. Can be used all purposes.
Maintained by Hendrik van der Wurp. Last updated 3 years ago.
0.5 match 2.00 scorearneschoch811
OscillatorGenerator:Generation of Customizable, Discretized Time Series of Oscillating Species
The supplied code allows for the generation of discrete time series of oscillating species. General shapes can be selected by means of individual functions, which are widely customizable by means of function arguments. All code was developed in the Biological Information Processing Group at the BioQuant Center at Heidelberg University, Germany.
Maintained by Arne Schoch. Last updated 7 years ago.
0.5 match 1.00 score 7 scripts