Showing 5 of total 5 results (show query)
tidymodels
infer:Tidy Statistical Inference
The objective of this package is to perform inference using an expressive statistical grammar that coheres with the tidy design framework.
Maintained by Simon Couch. Last updated 7 months ago.
736 stars 15.75 score 3.5k scripts 18 dependents
mcanouil
NACHO:NanoString Quality Control Dashboard
NanoString nCounter data are gene expression assays where there is no need for the use of enzymes or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) <doi:10.1038/nbt1385>). Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. As a result each count of a specific barcode represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter data and facilitates the user in performing a quality control. 'NACHO' does this by visualising quality control metrics, expression of control genes, principal components and sample specific size factors in an interactive web application.
Maintained by Mickaël Canouil. Last updated 1 years ago.
mirnamrnananostringnormalisationquality-controlshiny
8 stars 5.41 score 32 scripts
l-a-yates
cpam:Changepoint Additive Models for Time Series Omics Data
Provides a comprehensive framework for time series omics analysis, integrating changepoint detection, smooth and shape-constrained trends, and uncertainty quantification. It supports gene- and transcript-level inferences, p-value aggregation for improved power, and both case-only and case-control designs. It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.
Maintained by Luke Yates. Last updated 19 days ago.
1 stars 5.06 score
nano-optics
cda:Coupled-Dipole Approximation for Electromagnetic Scattering by Three- Dimensional Clusters of Sub-Wavelength Particles
Coupled-dipole simulations for electromagnetic scattering of light by sub-wavelength particles in arbitrary 3-dimensional configurations. Scattering and absorption spectra are simulated by inversion of the interaction matrix, or by an order-of-scattering approximation scheme. High-level functions are provided to simulate spectra with varying angles of incidence, as well as with full angular averaging.
Maintained by Baptiste Auguie. Last updated 3 years ago.
2 stars 2.78 score 60 scripts
rogiersbart
morphology:Morphological description of 3D categorical arrays
The {morphology} package implements a flexible API for the calculation of nearest-neighbour based morphological quantities for one-, two- or three-dimensional categorical arrays.
Maintained by Bart Rogiers. Last updated 9 months ago.
2.00 score 3 scripts