Showing 3 of total 3 results (show query)
bioc
NetPathMiner:NetPathMiner for Biological Network Construction, Path Mining and Visualization
NetPathMiner is a general framework for network path mining using genome-scale networks. It constructs networks from KGML, SBML and BioPAX files, providing three network representations, metabolic, reaction and gene representations. NetPathMiner finds active paths and applies machine learning methods to summarize found paths for easy interpretation. It also provides static and interactive visualizations of networks and paths to aid manual investigation.
Maintained by Ahmed Mohamed. Last updated 4 months ago.
graphandnetworkpathwaysnetworkclusteringclassificationlibsbmllibxml2openblascpp
9 stars 6.56 score 9 scriptsbioc
RCX:R package implementing the Cytoscape Exchange (CX) format
Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.
Maintained by Florian Auer. Last updated 5 months ago.
8 stars 6.28 score 10 scripts 1 dependentsbioc
hypergraph:A package providing hypergraph data structures
A package that implements some simple capabilities for representing and manipulating hypergraphs.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
3.38 score 2 scripts 4 dependents