Showing 20 of total 20 results (show query)
tidyverse
dplyr:A Grammar of Data Manipulation
A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
Maintained by Hadley Wickham. Last updated 25 days ago.
4.8k stars 24.68 score 659k scripts 7.8k dependentstidyverse
tidyr:Tidy Messy Data
Tools to help to create tidy data, where each column is a variable, each row is an observation, and each cell contains a single value. 'tidyr' contains tools for changing the shape (pivoting) and hierarchy (nesting and 'unnesting') of a dataset, turning deeply nested lists into rectangular data frames ('rectangling'), and extracting values out of string columns. It also includes tools for working with missing values (both implicit and explicit).
Maintained by Hadley Wickham. Last updated 25 days ago.
1.4k stars 22.88 score 168k scripts 5.5k dependentstidyverse
tibble:Simple Data Frames
Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.
Maintained by Kirill Müller. Last updated 9 days ago.
693 stars 22.85 score 47k scripts 11k dependents
kassambara
rstatix:Pipe-Friendly Framework for Basic Statistical Tests
Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy, for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. The output of each test is automatically transformed into a tidy data frame to facilitate visualization. Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix. Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs (repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs. It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and 'Cramer V' for the association between categorical variables. The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Maintained by Alboukadel Kassambara. Last updated 2 years ago.
458 stars 15.27 score 11k scripts 432 dependents
cynkra
dm:Relational Data Models
Provides tools for working with multiple related tables, stored as data frames or in a relational database. Multiple tables (data and metadata) are stored in a compound object, which can then be manipulated with a pipe-friendly syntax.
Maintained by Kirill Müller. Last updated 3 months ago.
data-modeldata-warehousingdatawarehousingdbidbplyrrelational-databases
511 stars 14.81 score 410 scripts 8 dependents
tidyverts
tsibble:Tidy Temporal Data Frames and Tools
Provides a 'tbl_ts' class (the 'tsibble') for temporal data in an data- and model-oriented format. The 'tsibble' provides tools to easily manipulate and analyse temporal data, such as filling in time gaps and aggregating over calendar periods.
Maintained by Earo Wang. Last updated 2 months ago.
538 stars 14.47 score 4.4k scripts 42 dependents
yulab-smu
tidytree:A Tidy Tool for Phylogenetic Tree Data Manipulation
Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Maintained by Guangchuang Yu. Last updated 8 months ago.
phylogenetic-treetidyversetree-data
56 stars 13.36 score 584 scripts 128 dependents
ropensci
treeio:Base Classes and Functions for Phylogenetic Tree Input and Output
'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.
Maintained by Guangchuang Yu. Last updated 5 months ago.
softwareannotationclusteringdataimportdatarepresentationalignmentmultiplesequencealignmentphylogeneticsexporterparserphylogenetic-trees
102 stars 12.46 score 1.3k scripts 122 dependents
indrajeetpatil
statsExpressions:Tidy Dataframes and Expressions with Statistical Details
Utilities for producing dataframes with rich details for the most common types of statistical approaches and tests: parametric, nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation analyses, contingency table analyses, and meta-analyses. The functions are pipe-friendly and provide a consistent syntax to work with tidy data. These dataframes additionally contain expressions with statistical details, and can be used in graphing packages. This package also forms the statistical processing backend for 'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Maintained by Indrajeet Patil. Last updated 1 months ago.
bayesian-inferencebayesian-statisticscontingency-tablecorrelationeffectsizemeta-analysisparametricrobustrobust-statisticsstatistical-detailsstatistical-teststidy
312 stars 10.92 score 146 scripts 2 dependents
jmsigner
amt:Animal Movement Tools
Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate home ranges, track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses, and simulation of space-use from fitted step-selection functions.
Maintained by Johannes Signer. Last updated 5 months ago.
41 stars 10.54 score 418 scripts
bioc
tidybulk:Brings transcriptomics to the tidyverse
This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.
Maintained by Stefano Mangiola. Last updated 11 days ago.
assaydomaininfrastructurernaseqdifferentialexpressiongeneexpressionnormalizationclusteringqualitycontrolsequencingtranscriptiontranscriptomicsbioconductorbulk-transcriptional-analysesdeseq2differential-expressionedgerensembl-idsentrezgene-symbolsgseamds-dimensionspcapiperedundancytibbletidytidy-datatidyversetranscriptstsne
171 stars 9.57 score 172 scripts 1 dependents
radiant-rstats
radiant.data:Data Menu for Radiant: Business Analytics using R and Shiny
The Radiant Data menu includes interfaces for loading, saving, viewing, visualizing, summarizing, transforming, and combining data. It also contains functionality to generate reproducible reports of the analyses conducted in the application.
Maintained by Vincent Nijs. Last updated 5 months ago.
53 stars 8.25 score 146 scripts 6 dependents
mgirlich
tibblify:Rectangle Nested Lists
A tool to rectangle a nested list, that is to convert it into a tibble. This is done automatically or according to a given specification. A common use case is for nested lists coming from parsing JSON files or the JSON response of REST APIs. It is supported by the 'vctrs' package and therefore offers a wide support of vector types.
Maintained by Maximilian Girlich. Last updated 1 years ago.
68 stars 7.85 score 50 scripts 7 dependents
strohne
volker:High-Level Functions for Tabulating, Charting and Reporting Survey Data
Craft polished tables and plots in Markdown reports. Simply choose whether to treat your data as counts or metrics, and the package will automatically generate well-designed default tables and plots for you. Boiled down to the basics, with labeling features and simple interactive reports. All functions are 'tidyverse' compatible.
Maintained by Jakob Jünger. Last updated 15 days ago.
5 stars 7.16 score 125 scripts
danchaltiel
EDCimport:Import Data from EDC Software
A convenient toolbox to import data exported from Electronic Data Capture (EDC) software 'TrialMaster'.
Maintained by Dan Chaltiel. Last updated 18 days ago.
6.01 score 12 scripts
forestgeo
fgeo.tool:Import and Manipulate 'ForestGEO' Data
To help you access, transform, analyze, and visualize 'ForestGEO' data, we developed a collection of R packages (<https://forestgeo.github.io/fgeo/>). This package, in particular, helps you to easily import, filter, and modify 'ForestGEO' data. To learn more about 'ForestGEO' visit <https://forestgeo.si.edu/>.
Maintained by Mauro Lepore. Last updated 3 years ago.
dynamicsecologyfgeoforestgeomiscelaneastoolstreeutils
2 stars 4.86 score 27 scripts 3 dependents
netcoupler
NetCoupler:Inference of Causal Links Between a Network and an External Variable
The 'NetCoupler' algorithm identifies potential direct effects of correlated, high-dimensional variables formed as a network with an external variable. The external variable may act as the dependent/response variable or as an independent/predictor variable to the network.
Maintained by Luke Johnston. Last updated 1 years ago.
6 stars 4.78 score 7 scripts
courtiol
lay:Simple but Efficient Rowwise Jobs
Creating efficiently new column(s) in a data frame (including tibble) by applying a function one row at a time.
Maintained by Alexandre Courtiol. Last updated 1 years ago.
18 stars 4.18 score 17 scripts
torfason
qst:Store Tables in SQL Database
Provides functions for quickly writing (and reading back) a data.frame to file in 'SQLite' format. The name stands for *Store Tables using 'SQLite'*, or alternatively for *Quick Store Tables* (either way, it could be pronounced as *Quest*). For data.frames containing the supported data types it is intended to work as a drop-in replacement for the 'write_*()' and 'read_*()' functions provided by similar packages.
Maintained by Magnus Thor Torfason. Last updated 1 years ago.
2.70 score 1 scripts
scar
solong:Allometric Equations for Southern Ocean Taxa
Provides allometric equations that relate the body size of Southern Ocean taxa to body part measurements.
Maintained by Ben Raymond. Last updated 3 years ago.
1.70 score 8 scripts