Showing 13 of total 13 results (show query)
talgalili
dendextend:Extending 'dendrogram' Functionality in R
Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.
Maintained by Tal Galili. Last updated 2 months ago.
154 stars 17.13 score 6.0k scripts 165 dependents
projectmosaic
mosaic:Project MOSAIC Statistics and Mathematics Teaching Utilities
Data sets and utilities from Project MOSAIC (<http://www.mosaic-web.org>) used to teach mathematics, statistics, computation and modeling. Funded by the NSF, Project MOSAIC is a community of educators working to tie together aspects of quantitative work that students in science, technology, engineering and mathematics will need in their professional lives, but which are usually taught in isolation, if at all.
Maintained by Randall Pruim. Last updated 1 years ago.
93 stars 13.32 score 7.2k scripts 7 dependents
gavinsimpson
permute:Functions for Generating Restricted Permutations of Data
A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.
Maintained by Gavin L. Simpson. Last updated 8 months ago.
permutationrestricted-permutations
23 stars 13.28 score 538 scripts 488 dependents
bioc
ChIPseeker:ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
This package implements functions to retrieve the nearest genes around the peak, annotate genomic region of the peak, statstical methods for estimate the significance of overlap among ChIP peak data sets, and incorporate GEO database for user to compare the own dataset with those deposited in database. The comparison can be used to infer cooperative regulation and thus can be used to generate hypotheses. Several visualization functions are implemented to summarize the coverage of the peak experiment, average profile and heatmap of peaks binding to TSS regions, genomic annotation, distance to TSS, and overlap of peaks or genes.
Maintained by Guangchuang Yu. Last updated 5 months ago.
annotationchipseqsoftwarevisualizationmultiplecomparisonatac-seqchip-seqcomparisonepigeneticsepigenomics
233 stars 13.05 score 1.6k scripts 5 dependents
mlr-org
mlr3misc:Helper Functions for 'mlr3'
Frequently used helper functions and assertions used in 'mlr3' and its companion packages. Comes with helper functions for functional programming, for printing, to work with 'data.table', as well as some generally useful 'R6' classes. This package also supersedes the package 'BBmisc'.
Maintained by Marc Becker. Last updated 4 months ago.
machine-learningmiscellaneousmlr3
12 stars 10.28 score 302 scripts 42 dependents
sdctools
sdcMicro:Statistical Disclosure Control Methods for Anonymization of Data and Risk Estimation
Data from statistical agencies and other institutions are mostly confidential. This package, introduced in Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v067.i04>, can be used for the generation of anonymized (micro)data, i.e. for the creation of public- and scientific-use files. The theoretical basis for the methods implemented can be found in Templ (2017) <doi:10.1007/978-3-319-50272-4>. Various risk estimation and anonymization methods are included. Note that the package includes a graphical user interface published in Meindl and Templ (2019) <doi:10.3390/a12090191> that allows to use various methods of this package.
Maintained by Matthias Templ. Last updated 1 months ago.
84 stars 9.63 score 258 scripts
dtkaplan
LSTbook:Data and Software for "Lessons in Statistical Thinking"
"Lessons in Statistical Thinking" D.T. Kaplan (2014) <https://dtkaplan.github.io/Lessons-in-statistical-thinking/> is a textbook for a first or second course in statistics that embraces data wrangling, causal reasoning, modeling, statistical adjustment, and simulation. 'LSTbook' supports the student-centered, tidy, pipeline-oriented computing style featured in the book.
Maintained by Daniel Kaplan. Last updated 3 days ago.
4 stars 6.32 score 27 scripts
kleinbub
rMEA:Synchrony in Motion Energy Analysis (MEA) Time-Series
A suite of tools useful to read, visualize and export bivariate motion energy time-series. Lagged synchrony between subjects can be analyzed through windowed cross-correlation. Surrogate data generation allows an estimation of pseudosynchrony that helps to estimate the effect size of the observed synchronization. Kleinbub, J. R., & Ramseyer, F. T. (2020). rMEA: An R package to assess nonverbal synchronization in motion energy analysis time-series. Psychotherapy research, 1-14. <doi:10.1080/10503307.2020.1844334>.
Maintained by Johann R. Kleinbub. Last updated 4 months ago.
15 stars 4.73 score 24 scripts
bergsmat
nonmemica:Create and Evaluate NONMEM Models in a Project Context
Systematically creates and modifies NONMEM(R) control streams. Harvests NONMEM output, builds run logs, creates derivative data, generates diagnostics. NONMEM (ICON Development Solutions <https://www.iconplc.com/>) is software for nonlinear mixed effects modeling. See 'package?nonmemica'.
Maintained by Tim Bergsma. Last updated 3 months ago.
4 stars 4.58 score 45 scripts
jessevent
pingers:Identify, Ping, and Log Internet Provider Connection Data
To assist you with troubleshooting internet connection issues and assist in isolating packet loss on your network. It does this by allowing you to retrieve the top trace route destinations your internet provider uses, and recursively ping each server in series while capturing the results and writing them to a log file. Each iteration it queries the destinations again, before shuffling the sequence of destinations to ensure the analysis is unbiased and consistent across each trace route.
Maintained by Jesse Vent. Last updated 6 years ago.
4 stars 3.30 score 8 scripts
inqs909
csucistats:CSU Channel Islands R Tools
An R package containing functions for statistics courses at CSUCI.
Maintained by Isaac Quintanilla Salinas. Last updated 6 days ago.
3.02 score 14 scripts
doer0
doofa:Designs for Order-of-Addition Experiments
A facility to generate efficient designs for order-of-additions experiments under pair-wise-order model, see Dennis K. J. Lin and Jiayu Peng (2019)."Order-of-addition experiments: A review and some new thoughts". Quality Engineering, 31:1, 49-59, <doi:10.1080/08982112.2018.1548021>. It also provides a facility to generate component orthogonal arrays under component position model, see Jian-Feng Yang, Fasheng Sun & Hongquan Xu (2020): "A Component Position Model, Analysis and Design for Order-of-Addition Experiments". Technometrics, <doi:10.1080/00401706.2020.1764394>.
Maintained by Baidya Nath Mandal. Last updated 11 months ago.
1.48 score 1 dependents
kylecaudle
shuffleCI:Confidence Intervals Compared via Shuffling
Scripts and exercises that use card shuffling to teach confidence interval comparisons for different estimators.
Maintained by Kyle Caudle. Last updated 7 years ago.
1.00 score 4 scripts