Showing 9 of total 9 results (show query)
rstudio
renv:Project Environments
A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.
Maintained by Kevin Ushey. Last updated 3 days ago.
1.0k stars 18.59 score 1.5k scripts 114 dependentsrstudio
packrat:A Dependency Management System for Projects and their R Package Dependencies
Manage the R packages your project depends on in an isolated, portable, and reproducible way.
Maintained by Aron Atkins. Last updated 2 months ago.
406 stars 12.15 score 256 scripts 9 dependents
bioc
ShortRead:FASTQ input and manipulation
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
dataimportsequencingqualitycontrolbioconductor-packagecore-packagezlibcpp
8 stars 12.08 score 1.8k scripts 49 dependents
r-world-devs
cohortBuilder:Data Source Agnostic Filtering Tools
Common API for filtering data stored in different data models. Provides multiple filter types and reproducible R code. Works standalone or with 'shinyCohortBuilder' as the GUI for interactive Shiny apps.
Maintained by Krystian Igras. Last updated 11 days ago.
8 stars 8.01 score 55 scripts 1 dependents
polmine
polmineR:Verbs and Nouns for Corpus Analysis
Package for corpus analysis using the Corpus Workbench ('CWB', <https://cwb.sourceforge.io>) as an efficient back end for indexing and querying large corpora. The package offers functionality to flexibly create subcorpora and to carry out basic statistical operations (count, co-occurrences etc.). The original full text of documents can be reconstructed and inspected at any time. Beyond that, the package is intended to serve as an interface to packages implementing advanced statistical procedures. Respective data structures (document-term matrices, term-co-occurrence matrices etc.) can be created based on the indexed corpora.
Maintained by Andreas Blaette. Last updated 1 years ago.
49 stars 7.96 score 311 scripts
gaborcsardi
prompt:Dynamic 'R' Prompt
Set the 'R' prompt dynamically, from a function. The package contains some examples to include various useful dynamic information in the prompt: the status of the last command (success or failure); the amount of memory allocated by the current 'R' process; the name of the R package(s) loaded by 'pkgload' and/or 'devtools'; various 'git' information: the name of the active branch, whether it is dirty, if it needs pushes pulls. You can also create your own prompt if you don't like the predefined examples.
Maintained by Gábor Csárdi. Last updated 2 years ago.
229 stars 6.12 score 57 scripts
jlaake
RMark:R Code for Mark Analysis
An interface to the software package MARK that constructs input files for MARK and extracts the output. MARK was developed by Gary White and is freely available at <http://www.phidot.org/software/mark/downloads/> but is not open source.
Maintained by Jeff Laake. Last updated 3 years ago.
4.77 score 366 scripts 4 dependents
