R-universe search: exports:plotTrack

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rmendels

rerddapXtracto:Extracts Environmental Data from 'ERDDAP™' Web Services

Contains three functions that access environmental data from any 'ERDDAP™' data web service. The rxtracto() function extracts data along a trajectory for a given "radius" around the point. The rxtracto_3D() function extracts data in a box. The rxtractogon() function extracts data in a polygon. All of those three function use the 'rerddap' package to extract the data, and should work with any 'ERDDAP™' server. There are also two functions, plotBBox() and plotTrack() that use the 'plotdap' package to simplify the creation of maps of the data.

Maintained by Roy Mendelssohn. Last updated 12 days ago.

14 stars 5.97 score 44 scripts

bioc

R3CPET:3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

The package provides a method to infer the set of proteins that are more probably to work together to maintain chormatin interaction given a ChIA-PET experiment results.

Maintained by Mohamed Nadhir Djekidel. Last updated 5 months ago.

networkinference geneprediction bayesian graphandnetwork network geneexpression hic chia-pet chromatin-interaction dirichlet-process-mixtures transcription-facto cpp

4 stars 5.45 score 5 scripts

bioc

RiboDiPA:Differential pattern analysis for Ribo-seq data

This package performs differential pattern analysis for Ribo-seq data. It identifies genes with significantly different patterns in the ribosome footprint between two conditions. RiboDiPA contains five major components including bam file processing, P-site mapping, data binning, differential pattern analysis and footprint visualization.

Maintained by Ji-Ping Wang. Last updated 4 months ago.

riboseq geneexpression generegulation differentialexpression sequencing coverage alignment rnaseq immunooncology qualitycontrol dataimport software normalization cpp

4.30 score 1 scripts