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ChIPseqR:Identifying Protein Binding Sites in High-Throughput Sequencing Data
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Maintained by Peter Humburg. Last updated 5 months ago.
4.70 score 1 scriptsbioc
ChIPexoQual:ChIPexoQual
Package with a quality control pipeline for ChIP-exo/nexus data.
Maintained by Rene Welch. Last updated 5 months ago.
chipseqsequencingtranscriptionvisualizationqualitycontrolcoveragealignment
1 stars 4.30 score 5 scriptsbioc
TransView:Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.
Maintained by Julius Muller. Last updated 2 months ago.
immunooncologydnamethylationgeneexpressiontranscriptionmicroarraysequencingchipseqrnaseqmethylseqdataimportvisualizationclusteringmultiplecomparisoncurlbzip2xz-utilszlib
2.60 score