Showing 3 of total 3 results (show query)
bioc
easyRNASeq:Count summarization and normalization for RNA-Seq data
Calculates the coverage of high-throughput short-reads against a genome of reference and summarizes it per feature of interest (e.g. exon, gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq' or 'edgeR' package.
Maintained by Nicolas Delhomme. Last updated 5 months ago.
geneexpressionrnaseqgeneticspreprocessingimmunooncology
5.43 score 15 scripts 1 dependentsbioc
PhIPData:Container for PhIP-Seq Experiments
PhIPData defines an S4 class for phage-immunoprecipitation sequencing (PhIP-seq) experiments. Buliding upon the RangedSummarizedExperiment class, PhIPData enables users to coordinate metadata with experimental data in analyses. Additionally, PhIPData provides specialized methods to subset and identify beads-only samples, subset objects using virus aliases, and use existing peptide libraries to populate object parameters.
Maintained by Athena Chen. Last updated 5 months ago.
infrastructuredatarepresentationsequencingcoverage
6 stars 5.26 score 6 scripts 1 dependentsbioc
bnbc:Bandwise normalization and batch correction of Hi-C data
Tools to normalize (several) Hi-C data from replicates.
Maintained by Kipper Fletez-Brant. Last updated 5 months ago.
hicpreprocessingnormalizationsoftwarecpp
1 stars 3.88 score 15 scripts