Showing 31 of total 31 results (show query)
tidyverse
dplyr:A Grammar of Data Manipulation
A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
Maintained by Hadley Wickham. Last updated 26 days ago.
4.8k stars 24.68 score 659k scripts 7.8k dependents
hadley
plyr:Tools for Splitting, Applying and Combining Data
A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.
Maintained by Hadley Wickham. Last updated 5 months ago.
500 stars 18.16 score 83k scripts 3.3k dependents
cvxgrp
CVXR:Disciplined Convex Optimization
An object-oriented modeling language for disciplined convex programming (DCP) as described in Fu, Narasimhan, and Boyd (2020, <doi:10.18637/jss.v094.i14>). It allows the user to formulate convex optimization problems in a natural way following mathematical convention and DCP rules. The system analyzes the problem, verifies its convexity, converts it into a canonical form, and hands it off to an appropriate solver to obtain the solution. Interfaces to solvers on CRAN and elsewhere are provided, both commercial and open source.
Maintained by Anqi Fu. Last updated 5 months ago.
207 stars 12.89 score 768 scripts 51 dependents
bioc
ShortRead:FASTQ input and manipulation
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
dataimportsequencingqualitycontrolbioconductor-packagecore-packagezlibcpp
8 stars 12.08 score 1.8k scripts 49 dependents
r-lib
gmailr:Access the 'Gmail' 'RESTful' API
An interface to the 'Gmail' 'RESTful' API. Allows access to your 'Gmail' messages, threads, drafts and labels.
Maintained by Jennifer Bryan. Last updated 1 years ago.
230 stars 11.50 score 289 scripts 1 dependents
covid19datahub
COVID19:COVID-19 Data Hub
Unified datasets for a better understanding of COVID-19.
Maintained by Emanuele Guidotti. Last updated 1 months ago.
2019-ncovcoronaviruscovid-19covid-datacovid19-data
252 stars 11.08 score 265 scripts
crunch-io
crunch:Crunch.io Data Tools
The Crunch.io service <https://crunch.io/> provides a cloud-based data store and analytic engine, as well as an intuitive web interface. Using this package, analysts can interact with and manipulate Crunch datasets from within R. Importantly, this allows technical researchers to collaborate naturally with team members, managers, and clients who prefer a point-and-click interface.
Maintained by Greg Freedman Ellis. Last updated 8 days ago.
9 stars 10.47 score 200 scripts 2 dependents
geoffjentry
twitteR:R Based Twitter Client
Provides an interface to the Twitter web API.
Maintained by Jeff Gentry. Last updated 9 years ago.
254 stars 10.12 score 2.0k scripts 1 dependents
datawookie
emayili:Send Email Messages
A light, simple tool for sending emails with minimal dependencies.
Maintained by Andrew B. Collier. Last updated 2 months ago.
180 stars 9.59 score 95 scripts 3 dependents
cmmr
rbiom:Read/Write, Analyze, and Visualize 'BIOM' Data
A toolkit for working with Biological Observation Matrix ('BIOM') files. Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and beta diversity (including 'UniFrac'). Summarize counts by taxonomic level. Subset based on metadata. Generate visualizations and statistical analyses. CPU intensive operations are coded in C for speed.
Maintained by Daniel P. Smith. Last updated 11 days ago.
15 stars 9.07 score 117 scripts 6 dependents
clementcalenge
adehabitatLT:Analysis of Animal Movements
A collection of tools for the analysis of animal movements.
Maintained by Clement Calenge. Last updated 7 months ago.
6 stars 8.60 score 370 scripts 12 dependents
ropensci
oai:General Purpose 'Oai-PMH' Services Client
A general purpose client to work with any 'OAI-PMH' (Open Archives Initiative Protocol for 'Metadata' Harvesting) service. The 'OAI-PMH' protocol is described at <http://www.openarchives.org/OAI/openarchivesprotocol.html>. Functions are provided to work with the 'OAI-PMH' verbs: 'GetRecord', 'Identify', 'ListIdentifiers', 'ListMetadataFormats', 'ListRecords', and 'ListSets'.
Maintained by Michal Bojanowski. Last updated 2 years ago.
data-accessoai-pmhpeer-reviewedscholarly-api
15 stars 8.55 score 23 scripts 24 dependents
robinhankin
permutations:The Symmetric Group: Permutations of a Finite Set
Manipulates invertible functions from a finite set to itself. Can transform from word form to cycle form and back. To cite the package in publications please use Hankin (2020) "Introducing the permutations R package", SoftwareX, volume 11 <doi:10.1016/j.softx.2020.100453>.
Maintained by Robin K. S. Hankin. Last updated 2 months ago.
6 stars 8.23 score 49 scripts 2 dependentsbioc
mzID:An mzIdentML parser for R
A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.
Maintained by Laurent Gatto. Last updated 5 months ago.
immunooncologydataimportmassspectrometryproteomics
7.83 score 32 scripts 38 dependents
ssi-dk
SCDB:Easily Access and Maintain Time-Based Versioned Data (Slowly-Changing-Dimension)
A collection of functions that enable easy access and updating of a database of data over time. More specifically, the package facilitates type-2 history for data-warehouses and provides a number of Quality of life improvements for working on SQL databases with R. For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Maintained by Rasmus Skytte Randløv. Last updated 1 days ago.
6 stars 7.40 score 11 scripts 1 dependents
bartonicek
plotscaper:Explore Your Data with Interactive Figures
A framework for creating interactive figures for data exploration. All plots are automatically linked and support several kinds of interactive features, including selection, zooming, panning, and parameter manipulation. The figures can be interacted with either manually, using a mouse and a keyboard, or by running code from inside an active R session.
Maintained by Adam Bartonicek. Last updated 1 months ago.
16 stars 7.36 score 23 scripts
trinker
wakefield:Generate Random Data Sets
Generates random data sets including: data.frames, lists, and vectors.
Maintained by Tyler Rinker. Last updated 5 years ago.
256 stars 7.13 score 209 scriptstrinker
qdapTools:Tools for the 'qdap' Package
A collection of tools associated with the 'qdap' package that may be useful outside of the context of text analysis.
Maintained by Tyler Rinker. Last updated 2 years ago.
16 stars 6.96 score 408 scripts 5 dependents
ajschumacher
rjstat:Handle 'JSON-stat' Format in R
Handle 'JSON-stat' format (<https://json-stat.org>) in R. Not all features are supported, especially the extensive metadata features of 'JSON-stat'.
Maintained by Aaron Schumacher. Last updated 2 years ago.
32 stars 6.71 score 179 scripts 3 dependentsbioc
Pedixplorer:Pedigree Functions
Routines to handle family data with a Pedigree object. The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for Pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the Pedigree object with various criteria, and kinship for the X chromosome.
Maintained by Louis Le Nezet. Last updated 14 days ago.
softwaredatarepresentationgeneticsgraphandnetworkvisualizationkinshippedigree
2 stars 6.08 score 10 scripts
taikisan21
PAMpal:Load and Process Passive Acoustic Data
Tools for loading and processing passive acoustic data. Read in data that has been processed in 'Pamguard' (<https://www.pamguard.org/>), apply a suite processing functions, and export data for reports or external modeling tools. Parameter calculations implement methods by Oswald et al (2007) <doi:10.1121/1.2743157>, Griffiths et al (2020) <doi:10.1121/10.0001229> and Baumann-Pickering et al (2010) <doi:10.1121/1.3479549>.
Maintained by Taiki Sakai. Last updated 26 days ago.
9 stars 5.87 score 79 scriptsbioc
HiTC:High Throughput Chromosome Conformation Capture analysis
The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.
Maintained by Nicolas Servant. Last updated 5 months ago.
sequencinghighthroughputsequencinghic
5.23 score 42 scriptsrobinhankin
freegroup:The Free Group
The free group in R; juxtaposition is represented by a plus. Includes inversion, multiplication by a scalar, group-theoretic power operation, and Tietze forms. To cite the package in publications please use Hankin (2022) <doi:10.48550/ARXIV.2212.05883>.
Maintained by Robin K. S. Hankin. Last updated 9 days ago.
5.06 score 33 scripts
kleinbub
rMEA:Synchrony in Motion Energy Analysis (MEA) Time-Series
A suite of tools useful to read, visualize and export bivariate motion energy time-series. Lagged synchrony between subjects can be analyzed through windowed cross-correlation. Surrogate data generation allows an estimation of pseudosynchrony that helps to estimate the effect size of the observed synchronization. Kleinbub, J. R., & Ramseyer, F. T. (2020). rMEA: An R package to assess nonverbal synchronization in motion energy analysis time-series. Psychotherapy research, 1-14. <doi:10.1080/10503307.2020.1844334>.
Maintained by Johann R. Kleinbub. Last updated 4 months ago.
15 stars 4.73 score 24 scriptsbioc
rsbml:R support for SBML, using libsbml
Links R to libsbml for SBML parsing, validating output, provides an S4 SBML DOM, converts SBML to R graph objects. Optionally links to the SBML ODE Solver Library (SOSLib) for simulating models.
Maintained by Michael Lawrence. Last updated 1 months ago.
graphandnetworkpathwaysnetworklibsbmlcpp
4.71 score 19 scripts 1 dependents
simon-lenau
prolific.api:A User-Friendly Interface for Accessing the Prolific API
A user-friendly interface for creating and managing empirical crowd-sourcing studies via API access to <https://www.prolific.co>.
Maintained by Simon Lenau. Last updated 2 years ago.
crowd-sourcingcrowdsourcing-experimentscrowdsourcing-platformsempirical-researchparticipantssampling
3.70 score 8 scripts
bioc
metahdep:Hierarchical Dependence in Meta-Analysis
Tools for meta-analysis in the presence of hierarchical (and/or sampling) dependence, including with gene expression studies
Maintained by John R. Stevens. Last updated 5 months ago.
microarraydifferentialexpression
3.30 score 2 scripts
korry74
LPM:Linear Parametric Models Applied to Hydrological Series
Apply Univariate Long Memory Models, Apply Multivariate Short Memory Models To Hydrological Dataset, Estimate Intensity Duration Frequency curve to rainfall series. NEW -- Calculate the monthly water requirement for herbaceous and arboreal plants.
Maintained by Corrado Tallerini. Last updated 10 months ago.
2.18 score 10 scripts
umatter
TheOpenAIR:Integrate 'OpenAI' Large Language Models into Your 'R' Workflows
Utilizing the 'OpenAI' API as the back end (<https://platform.openai.com/docs/api-reference>), 'TheOpenAIR' offers 'R' wrapper functions for the 'ChatGPT' endpoint and several high-level functions that enable the integration of 'ChatGPT' capabilities in diverse data-related tasks, such as data cleansing and automated analytics script generation.
Maintained by Ulrich Matter. Last updated 2 years ago.
1 stars 1.70 score 6 scripts