R-universe search: exports:header

Showing 20 of total 20 results (show query)

r-lidar

lidR:Airborne LiDAR Data Manipulation and Visualization for Forestry Applications

Airborne LiDAR (Light Detection and Ranging) interface for data manipulation and visualization. Read/write 'las' and 'laz' files, computation of metrics in area based approach, point filtering, artificial point reduction, classification from geographic data, normalization, individual tree segmentation and other manipulations.

Maintained by Jean-Romain Roussel. Last updated 2 months ago.

als forestry las laz lidar point-cloud remote-sensing openblas cpp openmp

623 stars 14.47 score 844 scripts 8 dependents

henrikbengtsson

R.utils:Various Programming Utilities

Utility functions useful when programming and developing R packages.

Maintained by Henrik Bengtsson. Last updated 1 years ago.

63 stars 13.74 score 5.7k scripts 814 dependents

appsilon

shiny.semantic:Semantic UI Support for Shiny

Creating a great user interface for your Shiny apps can be a hassle, especially if you want to work purely in R and don't want to use, for instance HTML templates. This package adds support for a powerful UI library Fomantic UI - <https://fomantic-ui.com/> (before Semantic). It also supports universal UI input binding that works with various DOM elements.

Maintained by Jakub Nowicki. Last updated 11 months ago.

appsilon fomantic-ui rhinoverse semantic semantic-components semantic-ui shiny

506 stars 13.00 score 586 scripts 3 dependents

bioc

mzR:parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a subset of the proteowizard library for mzXML, mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.

Maintained by Steffen Neumann. Last updated 2 months ago.

immunooncology infrastructure dataimport proteomics metabolomics massspectrometry zlib cpp

45 stars 12.77 score 204 scripts 44 dependents

bioc

MSnbase:Base Functions and Classes for Mass Spectrometry and Proteomics

MSnbase provides infrastructure for manipulation, processing and visualisation of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.

Maintained by Laurent Gatto. Last updated 14 days ago.

immunooncology infrastructure proteomics massspectrometry qualitycontrol dataimport bioconductor bioinformatics mass-spectrometry proteomics-data visualisation cpp

131 stars 12.76 score 772 scripts 36 dependents

bioc

SeqArray:Data management of large-scale whole-genome sequence variant calls using GDS files

Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation calls) and annotations in SeqArray GDS files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language.

Maintained by Xiuwen Zheng. Last updated 5 days ago.

infrastructure datarepresentation sequencing genetics bioinformatics gds-format snp snv wes wgs cpp

45 stars 12.11 score 1.1k scripts 9 dependents

bioc

VariantAnnotation:Annotation of Genetic Variants

Annotate variants, compute amino acid coding changes, predict coding outcomes.

Maintained by Bioconductor Package Maintainer. Last updated 3 months ago.

dataimport sequencing snp annotation genetics variantannotation curl bzip2 xz-utils zlib

11.39 score 1.9k scripts 152 dependents

bioc

biomformat:An interface package for the BIOM file format

This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

Maintained by Paul J. McMurdie. Last updated 5 months ago.

immunooncology dataimport metagenomics microbiome

7 stars 11.38 score 416 scripts 39 dependents

bioc

ChemmineR:Cheminformatics Toolkit for R

ChemmineR is a cheminformatics package for analyzing drug-like small molecule data in R. Its latest version contains functions for efficient processing of large numbers of molecules, physicochemical/structural property predictions, structural similarity searching, classification and clustering of compound libraries with a wide spectrum of algorithms. In addition, it offers visualization functions for compound clustering results and chemical structures.

Maintained by Thomas Girke. Last updated 5 months ago.

cheminformatics biomedicalinformatics pharmacogenetics pharmacogenomics microtitreplateassay cellbasedassays visualization infrastructure dataimport clustering proteomics metabolomics cpp

15 stars 10.45 score 253 scripts 12 dependents

msberends

cleaner:Fast and Easy Data Cleaning

Data cleaning functions for classes logical, factor, numeric, character, currency and Date to make data cleaning fast and easy. Relying on very few dependencies, it provides smart guessing, but with user options to override anything if needed.

Maintained by Matthijs S. Berends. Last updated 4 months ago.

32 stars 6.98 score 64 scripts 9 dependents

dfe-analytical-services

shinyGovstyle:Custom Gov Style Inputs for Shiny

Collection of 'shiny' application styling that are the based on the GOV.UK Design System. See <https://design-system.service.gov.uk/components/> for details.

Maintained by Ross Wyatt. Last updated 4 days ago.

44 stars 6.77 score 25 scripts

bioc

biscuiteer:Convenience Functions for Biscuit

A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.

Maintained by Jacob Morrison. Last updated 5 months ago.

dataimport methylseq dnamethylation

6 stars 5.98 score 16 scripts

bioc

TVTB:TVTB: The VCF Tool Box

The package provides S4 classes and methods to filter, summarise and visualise genetic variation data stored in VCF files. In particular, the package extends the FilterRules class (S4Vectors package) to define news classes of filter rules applicable to the various slots of VCF objects. Functionalities are integrated and demonstrated in a Shiny web-application, the Shiny Variant Explorer (tSVE).

Maintained by Kevin Rue-Albrecht. Last updated 5 months ago.

software genetics geneticvariability genomicvariation datarepresentation gui dnaseq wholegenome visualization multiplecomparison dataimport variantannotation sequencing coverage alignment sequencematching

2 stars 5.76 score 16 scripts

cmmr

webqueue:Multicore HTTP Server

Distributes HTTP requests among a pool of background R processes. Supports timeouts and interrupts of requests to ensure that CPU cores are utilized effectively.

Maintained by Daniel P. Smith. Last updated 17 days ago.

2 stars 5.15 score

clevelandclinicqhs

projects:A Project Infrastructure for Researchers

Provides a project infrastructure with a focus on manuscript creation. Creates a project folder with a single command, containing subdirectories for specific components, templates for manuscripts, and so on.

Maintained by Nik Krieger. Last updated 4 years ago.

31 stars 4.70 score 32 scripts

murrayefford

secrdesign:Sampling Design for Spatially Explicit Capture-Recapture

Tools for designing spatially explicit capture-recapture studies of animal populations. This is primarily a simulation manager for package 'secr'. Extensions in version 2.5.0 include costing and evaluation of detector spacing.

Maintained by Murray Efford. Last updated 2 days ago.

openblas cpp

4.35 score 56 scripts

kamapu

vegtable:Handling Vegetation Data Sets

Import and handling data from vegetation-plot databases, especially data stored in 'Turboveg 2' (<https://www.synbiosys.alterra.nl/turboveg/>). Also import/export routines for exchange of data with 'Juice' (<https://www.sci.muni.cz/botany/juice/>) are implemented.

Maintained by Miguel Alvarez. Last updated 9 months ago.

7 stars 4.23 score 49 scripts

tconwell

html5:Creates Valid HTML5 Strings

Generates valid HTML tag strings for HTML5 elements documented by Mozilla. Attributes are passed as named lists, with names being the attribute name and values being the attribute value. Attribute values are automatically double-quoted. To declare a DOCTYPE, wrap html() with function doctype(). Mozilla's documentation for HTML5 is available here: <https://developer.mozilla.org/en-US/docs/Web/HTML/Element>. Elements marked as obsolete are not included.

Maintained by Timothy Conwell. Last updated 2 years ago.

1 stars 3.65 score 1 scripts 3 dependents

baseldatascience

smetlite:Read and Write SMET Files

Simple class to hold contents of a SMET file as specified in Bavay (2021) <https://code.wsl.ch/snow-models/meteoio/-/blob/master/doc/SMET_specifications.pdf>. There numerical meteorological measurements are all based on MKS (SI) units and timestamp is standardized to UTC time.

Maintained by Reinhold Koch. Last updated 1 years ago.

2.70 score 1 scripts

rwalke

eoR:Data Management Package (Exposure and Occurrence Data in R)

This data management package provides some helper classes for publicly available data sources (HMD, DESTATIS) in Demography. Similar to ideas developed in the Bioconductor project <https://bioconductor.org> we strive to encapsulate data in easy to use S4 objects. If original data is provided in a text file, the resulting S4 object contains all information from that text file. But the information is somehow structured (header, footer, etc). Further the classes provide methods to make a subset for selected calendar years or selected regions. The resulting subset objects still contain the original header and footer information.

Maintained by Rainer Walke. Last updated 5 years ago.

1.70 score 4 scripts