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sherrillmix

taxonomizr:Functions to Work with NCBI Accessions and Taxonomy

Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.

Maintained by Scott Sherrill-Mix. Last updated 16 days ago.

72 stars 8.85 score 255 scripts 2 dependents

boost-r

FDboost:Boosting Functional Regression Models

Regression models for functional data, i.e., scalar-on-function, function-on-scalar and function-on-function regression models, are fitted by a component-wise gradient boosting algorithm. For a manual on how to use 'FDboost', see Brockhaus, Ruegamer, Greven (2017) <doi:10.18637/jss.v094.i10>.

Maintained by David Ruegamer. Last updated 1 days ago.

boostingboosting-algorithmsfunction-on-function-regressionfunction-on-scalar-regressionmachine-learningscalar-on-function-regressionvariable-selection

19 stars 8.43 score 98 scripts

highlanderlab

SIMplyBee:'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes

An extension of the 'AlphaSimR' package (<https://cran.r-project.org/package=AlphaSimR>) for stochastic simulations of honeybee populations and breeding programmes. 'SIMplyBee' enables simulation of individual bees that form a colony, which includes a queen, fathers (drones the queen mated with), virgin queens, workers, and drones. Multiple colony can be merged into a population of colonies, such as an apiary or a whole country of colonies. Functions enable operations on castes, colony, or colonies, to ease 'R' scripting of whole populations. All 'AlphaSimR' functionality with respect to genomes and genetic and phenotype values is available and further extended for honeybees, including haplo-diploidy, complementary sex determiner locus, colony events (swarming, supersedure, etc.), and colony phenotype values.

Maintained by Jana Obšteter. Last updated 6 months ago.

cppopenmp

2 stars 6.24 score 18 scripts

bioc

GeDi:Defining and visualizing the distances between different genesets

The package provides different distances measurements to calculate the difference between genesets. Based on these scores the genesets are clustered and visualized as graph. This is all presented in an interactive Shiny application for easy usage.

Maintained by Annekathrin Nedwed. Last updated 5 months ago.

guigenesetenrichmentsoftwaretranscriptionrnaseqvisualizationclusteringpathwaysreportwritinggokeggreactomeshinyapps

1 stars 5.52 score 22 scripts

roneyfraga

getLattes:Import and Process Data from the 'Lattes' Curriculum Platform

Tool for import and process data from 'Lattes' curriculum platform (<http://lattes.cnpq.br/>). The Brazilian government keeps an extensive base of curricula for academics from all over the country, with over 5 million registrations. The academic life of the Brazilian researcher, or related to Brazilian universities, is documented in 'Lattes'. Some information that can be obtained: professional formation, research area, publications, academics advisories, projects, etc. 'getLattes' package allows work with 'Lattes' data exported to XML format.

Maintained by Roney Fraga Souza. Last updated 7 months ago.

10 stars 5.38 score 16 scripts

qlcal

qlcal:R Bindings to the Calendaring Functionality of 'QuantLib'

'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now maintained separately just for the calendaring subset). See the included file 'AUTHORS' for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').

Maintained by Dirk Eddelbuettel. Last updated 1 months ago.

cpp

7 stars 4.99 score 28 scripts

eddelbuettel

RcppQuantuccia:R Bindings to the Calendaring Functionality of 'QuantLib'

'QuantLib' bindings are provided for R using 'Rcpp' via an updated variant of the header-only 'Quantuccia' project (put together initially by Peter Caspers) offering an essential subset of 'QuantLib' (and now maintained separately for the calendaring subset). See the included file 'AUTHORS' for a full list of contributors to both 'QuantLib' and 'Quantuccia'.

Maintained by Dirk Eddelbuettel. Last updated 4 months ago.

cpp11quantlibcpp

12 stars 4.62 score 23 scripts

antonio-pgarcia

rrepast:Invoke 'Repast Simphony' Simulation Models

An R and Repast integration tool for running individual-based (IbM) simulation models developed using 'Repast Simphony' Agent-Based framework directly from R code supporting multicore execution. This package integrates 'Repast Simphony' models within R environment, making easier the tasks of running and analyzing model output data for automated parameter calibration and for carrying out uncertainty and sensitivity analysis using the power of R environment.

Maintained by Antonio Prestes Garcia. Last updated 5 years ago.

openjdk

3 stars 4.53 score 38 scripts 1 dependents

nzilbb

nzilbb.labbcat:Accessing Data Stored in 'LaBB-CAT' Instances

'LaBB-CAT' is a web-based language corpus management system developed by the New Zealand Institute of Language, Brain and Behaviour (NZILBB) - see <https://labbcat.canterbury.ac.nz>. This package defines functions for accessing corpus data in a 'LaBB-CAT' instance. You must have at least version 20230224.1731 of 'LaBB-CAT' to use this package. For more information about 'LaBB-CAT', see Robert Fromont and Jennifer Hay (2008) <doi:10.3366/E1749503208000142> or Robert Fromont (2017) <doi:10.1016/j.csl.2017.01.004>.

Maintained by Robert Fromont. Last updated 1 years ago.

6 stars 4.03 score 36 scripts

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