Showing 6 of total 6 results (show query)
tidyverts
tsibble:Tidy Temporal Data Frames and Tools
Provides a 'tbl_ts' class (the 'tsibble') for temporal data in an data- and model-oriented format. The 'tsibble' provides tools to easily manipulate and analyse temporal data, such as filling in time gaps and aggregating over calendar periods.
Maintained by Earo Wang. Last updated 2 months ago.
536 stars 14.48 score 4.4k scripts 42 dependents
trinker
qdap:Bridging the Gap Between Qualitative Data and Quantitative Analysis
Automates many of the tasks associated with quantitative discourse analysis of transcripts containing discourse including frequency counts of sentence types, words, sentences, turns of talk, syllables and other assorted analysis tasks. The package provides parsing tools for preparing transcript data. Many functions enable the user to aggregate data by any number of grouping variables, providing analysis and seamless integration with other R packages that undertake higher level analysis and visualization of text. This affords the user a more efficient and targeted analysis. 'qdap' is designed for transcript analysis, however, many functions are applicable to other areas of Text Mining/ Natural Language Processing.
Maintained by Tyler Rinker. Last updated 5 years ago.
qdapquantitative-discourse-analysistext-analysistext-miningtext-plottingopenjdk
176 stars 9.47 score 1.3k scripts 3 dependents
bioc
TRONCO:TRONCO, an R package for TRanslational ONCOlogy
The TRONCO (TRanslational ONCOlogy) R package collects algorithms to infer progression models via the approach of Suppes-Bayes Causal Network, both from an ensemble of tumors (cross-sectional samples) and within an individual patient (multi-region or single-cell samples). The package provides parallel implementation of algorithms that process binary matrices where each row represents a tumor sample and each column a single-nucleotide or a structural variant driving the progression; a 0/1 value models the absence/presence of that alteration in the sample. The tool can import data from plain, MAF or GISTIC format files, and can fetch it from the cBioPortal for cancer genomics. Functions for data manipulation and visualization are provided, as well as functions to import/export such data to other bioinformatics tools for, e.g, clustering or detection of mutually exclusive alterations. Inferred models can be visualized and tested for their confidence via bootstrap and cross-validation. TRONCO is used for the implementation of the Pipeline for Cancer Inference (PICNIC).
Maintained by Luca De Sano. Last updated 6 days ago.
biomedicalinformaticsbayesiangraphandnetworksomaticmutationnetworkinferencenetworkclusteringdataimportsinglecellimmunooncologyalgorithmscancer-inferencetumors
30 stars 8.35 score 38 scripts
poissonconsulting
tidyplus:Additional 'tidyverse' Functions
Provides functions such as str_crush(), add_missing_column(), coalesce_data() and drop_na_all() that complement 'tidyverse' functionality or functions that provide alternative behaviors such as if_else2() and str_detect2().
Maintained by Ayla Pearson. Last updated 2 months ago.
9 stars 6.33 score 1 scripts 4 dependentsbioc
ChIPQC:Quality metrics for ChIPseq data
Quality metrics for ChIPseq data.
Maintained by Tom Carroll. Last updated 5 months ago.
sequencingchipseqqualitycontrolreportwriting
5.45 score 140 scripts
setempler
miscset:Miscellaneous Tools Set
A collection of miscellaneous methods to simplify various tasks, including plotting, data.frame and matrix transformations, environment functions, regular expression methods, and string and logical operations, as well as numerical and statistical tools. Most of the methods are simple but useful wrappers of common base R functions, which extend S3 generics or provide default values for important parameters.
Maintained by Sven E. Templer. Last updated 8 years ago.
1 stars 4.40 score 50 scripts