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bioc
EpiCompare:Comparison, Benchmarking & QC of Epigenomic Datasets
EpiCompare is used to compare and analyse epigenetic datasets for quality control and benchmarking purposes. The package outputs an HTML report consisting of three sections: (1. General metrics) Metrics on peaks (percentage of blacklisted and non-standard peaks, and peak widths) and fragments (duplication rate) of samples, (2. Peak overlap) Percentage and statistical significance of overlapping and non-overlapping peaks. Also includes upset plot and (3. Functional annotation) functional annotation (ChromHMM, ChIPseeker and enrichment analysis) of peaks. Also includes peak enrichment around TSS.
Maintained by Hiranyamaya Dash. Last updated 2 months ago.
epigeneticsgeneticsqualitycontrolchipseqmultiplecomparisonfunctionalgenomicsatacseqdnaseseqbenchmarkbenchmarkingbioconductorbioconductor-packagecomparisonhtmlinteractive-reporting
15 stars 7.49 score 46 scripts
dfe-analytical-services
shinyGovstyle:Custom Gov Style Inputs for Shiny
Collection of 'shiny' application styling that are the based on the GOV.UK Design System. See <https://design-system.service.gov.uk/components/> for details.
Maintained by Ross Wyatt. Last updated 9 days ago.
44 stars 6.77 score 25 scripts