Showing 8 of total 8 results (show query)
edzer
sp:Classes and Methods for Spatial Data
Classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc. From this version, 'rgdal', 'maptools', and 'rgeos' are no longer used at all, see <https://r-spatial.org/r/2023/05/15/evolution4.html> for details.
Maintained by Edzer Pebesma. Last updated 2 months ago.
127 stars 18.63 score 35k scripts 1.3k dependents
tiledb-inc
tiledb:Modern Database Engine for Complex Data Based on Multi-Dimensional Arrays
The modern database 'TileDB' introduces a powerful on-disk format for storing and accessing any complex data based on multi-dimensional arrays. It supports dense and sparse arrays, dataframes and key-values stores, cloud storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression, encryption and checksum filters, uses a fully multi-threaded implementation, supports parallel I/O, data versioning ('time travel'), metadata and groups. It is implemented as an embeddable cross-platform C++ library with APIs from several languages, and integrations. This package provides the R support.
Maintained by Isaiah Norton. Last updated 2 days ago.
arrayhdfss3storage-managertiledbcpp
108 stars 11.79 score 306 scripts 4 dependents
crunch-io
crunch:Crunch.io Data Tools
The Crunch.io service <https://crunch.io/> provides a cloud-based data store and analytic engine, as well as an intuitive web interface. Using this package, analysts can interact with and manipulate Crunch datasets from within R. Importantly, this allows technical researchers to collaborate naturally with team members, managers, and clients who prefer a point-and-click interface.
Maintained by Greg Freedman Ellis. Last updated 8 days ago.
9 stars 10.47 score 200 scripts 2 dependents
open-eo
openeo:Client Interface for 'openEO' Servers
Access data and processing functionalities of 'openEO' compliant back-ends in R.
Maintained by Florian Lahn. Last updated 2 months ago.
65 stars 8.65 score 128 scripts
appelmar
gdalcubes:Earth Observation Data Cubes from Satellite Image Collections
Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time, applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values, exporting data cubes as 'netCDF' or 'GeoTIFF' files, plotting, and extraction from spatial and or spatiotemporal features. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries. See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Maintained by Marius Appel. Last updated 9 days ago.
remote-sensingsatellite-imageryspatial-analysisgdalnetcdfcpp
124 stars 8.12 score 356 scripts
bioc
rsbml:R support for SBML, using libsbml
Links R to libsbml for SBML parsing, validating output, provides an S4 SBML DOM, converts SBML to R graph objects. Optionally links to the SBML ODE Solver Library (SOSLib) for simulating models.
Maintained by Michael Lawrence. Last updated 1 months ago.
graphandnetworkpathwaysnetworklibsbmlcpp
4.71 score 19 scripts 1 dependentsbioc
qckitfastq:FASTQ Quality Control
Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.
Maintained by August Guang. Last updated 5 months ago.
softwarequalitycontrolsequencingzlibcpp
4.38 score 24 scripts
psolymos
EDMAinR:Euclidean Distance Matrix Analysis in R
A coordinate-free approach for comparing biological shapes using landmark data based on Lele and Richtsmeier (1991) <doi:10.1002/ajpa.1330860307>.
Maintained by Peter Solymos. Last updated 2 years ago.
comparing-biological-shapescoordinate-freelandmark-datamorphometricsmultivariate-statistics
3 stars 3.78 score 9 scripts