Showing 19 of total 19 results (show query)
tidyverse
purrr:Functional Programming Tools
A complete and consistent functional programming toolkit for R.
Maintained by Hadley Wickham. Last updated 2 months ago.
1.3k stars 22.12 score 59k scripts 6.9k dependents
igraph
igraph:Network Analysis and Visualization
Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.
Maintained by Kirill Müller. Last updated 12 hours ago.
complex-networksgraph-algorithmsgraph-theorymathematicsnetwork-analysisnetwork-graphfortranlibxml2glpkopenblascpp
584 stars 21.14 score 31k scripts 1.9k dependents
davidgohel
flextable:Functions for Tabular Reporting
Use a grammar for creating and customizing pretty tables. The following formats are supported: 'HTML', 'PDF', 'RTF', 'Microsoft Word', 'Microsoft PowerPoint' and R 'Grid Graphics'. 'R Markdown', 'Quarto' and the package 'officer' can be used to produce the result files. The syntax is the same for the user regardless of the type of output to be produced. A set of functions allows the creation, definition of cell arrangement, addition of headers or footers, formatting and definition of cell content with text and or images. The package also offers a set of high-level functions that allow tabular reporting of statistical models and the creation of complex cross tabulations.
Maintained by David Gohel. Last updated 6 days ago.
docxhtml5ms-office-documentsrmarkdowntable
582 stars 17.09 score 7.3k scripts 124 dependents
bioc
ShortRead:FASTQ input and manipulation
This package implements sampling, iteration, and input of FASTQ files. The package includes functions for filtering and trimming reads, and for generating a quality assessment report. Data are represented as DNAStringSet-derived objects, and easily manipulated for a diversity of purposes. The package also contains legacy support for early single-end, ungapped alignment formats.
Maintained by Bioconductor Package Maintainer. Last updated 5 months ago.
dataimportsequencingqualitycontrolbioconductor-packagecore-packagezlibcpp
8 stars 12.08 score 1.8k scripts 49 dependents
hadley
pryr:Tools for Computing on the Language
Useful tools to pry back the covers of R and understand the language at a deeper level.
Maintained by Hadley Wickham. Last updated 1 years ago.
204 stars 11.93 score 1.9k scripts 57 dependents
mlr-org
mlr3misc:Helper Functions for 'mlr3'
Frequently used helper functions and assertions used in 'mlr3' and its companion packages. Comes with helper functions for functional programming, for printing, to work with 'data.table', as well as some generally useful 'R6' classes. This package also supersedes the package 'BBmisc'.
Maintained by Marc Becker. Last updated 4 months ago.
machine-learningmiscellaneousmlr3
12 stars 10.28 score 302 scripts 42 dependents
philips-software
latrend:A Framework for Clustering Longitudinal Data
A framework for clustering longitudinal datasets in a standardized way. The package provides an interface to existing R packages for clustering longitudinal univariate trajectories, facilitating reproducible and transparent analyses. Additionally, standard tools are provided to support cluster analyses, including repeated estimation, model validation, and model assessment. The interface enables users to compare results between methods, and to implement and evaluate new methods with ease. The 'akmedoids' package is available from <https://github.com/MAnalytics/akmedoids>.
Maintained by Niek Den Teuling. Last updated 3 months ago.
cluster-analysisclustering-evaluationclustering-methodsdata-sciencelongitudinal-clusteringlongitudinal-datamixture-modelstime-series-analysis
30 stars 6.77 score 26 scripts
yiluheihei
RevEcoR:Reverse Ecology Analysis on Microbiome
An implementation of the reverse ecology framework. Reverse ecology refers to the use of genomics to study ecology with no a priori assumptions about the organism(s) under consideration, linking organisms to their environment. It allows researchers to reconstruct the metabolic networks and study the ecology of poorly characterized microbial species from their genomic information, and has substantial potentials for microbial community ecological analysis.
Maintained by Yang Cao. Last updated 6 years ago.
6 stars 5.77 score 22 scripts 1 dependents
egnha
gestalt:Tools for Making and Combining Functions
Provides a suite of function-building tools centered around a (forward) composition operator, %>>>%, which extends the semantics of the 'magrittr' %>% operator and supports 'Tidyverse' quasiquotation. It enables you to construct composite functions that can be inspected and transformed as list-like objects. In conjunction with %>>>%, a compact function constructor, fn(), and a partial-application constructor, partial(), are also provided; both support quasiquotation.
Maintained by Eugene Ha. Last updated 3 years ago.
anonymous-functionsfunction-compositionpartial-applicationquasiquotation
38 stars 5.53 score 18 scriptsbioc
easyRNASeq:Count summarization and normalization for RNA-Seq data
Calculates the coverage of high-throughput short-reads against a genome of reference and summarizes it per feature of interest (e.g. exon, gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq' or 'edgeR' package.
Maintained by Nicolas Delhomme. Last updated 5 months ago.
geneexpressionrnaseqgeneticspreprocessingimmunooncology
5.43 score 15 scripts 1 dependents
beerda
lfl:Linguistic Fuzzy Logic
Various algorithms related to linguistic fuzzy logic: mining for linguistic fuzzy association rules, composition of fuzzy relations, performing perception-based logical deduction (PbLD), and forecasting time-series using fuzzy rule-based ensemble (FRBE). The package also contains basic fuzzy-related algebraic functions capable of handling missing values in different styles (Bochvar, Sobocinski, Kleene etc.), computation of Sugeno integrals and fuzzy transform.
Maintained by Michal Burda. Last updated 5 months ago.
association-rulesforecast-modelfuzzy-logicinference-rulescppopenmp
8 stars 5.35 score 28 scripts
sbg
biocompute:Create and Manipulate BioCompute Objects
Tools to create, validate, and export BioCompute Objects described in King et al. (2019) <doi:10.17605/osf.io/h59uh>. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard. A checksum validator and a JSON schema validator are provided. This package also supports exporting BioCompute Objects as JSON, PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.
Maintained by Soner Koc. Last updated 10 months ago.
biocomputebiocompute-objectsbioinformaticsscience-communicationsevenbridgesstandardizationworkflow
3 stars 4.07 score 13 scripts
halpo
dostats:Compute Statistics Helper Functions
A small package containing helper utilities for creating functions for computing statistics.
Maintained by Andrew Redd. Last updated 3 years ago.
3 stars 3.61 score 27 scripts
cran
Rdiagnosislist:Manipulate SNOMED CT Diagnosis Lists
Functions and methods for manipulating 'SNOMED CT' concepts. The package contains functions for loading the 'SNOMED CT' release into a convenient R environment, selecting 'SNOMED CT' concepts using regular expressions, and navigating the 'SNOMED CT' ontology. It provides the 'SNOMEDconcept' S3 class for a vector of 'SNOMED CT' concepts (stored as 64-bit integers) and the 'SNOMEDcodelist' S3 class for a table of concepts IDs with descriptions. The package can be used to construct sets of 'SNOMED CT' concepts for research (<doi:10.1093/jamia/ocac158>). For more information about 'SNOMED CT' visit <https://www.snomed.org/>.
Maintained by Anoop D. Shah. Last updated 2 months ago.
1 stars 3.60 score
fguenther
LSAfun:Applied Latent Semantic Analysis (LSA) Functions
Provides functions that allow for convenient working with vector space models of semantics/distributional semantic models/word embeddings. Originally built for LSA models (hence the name), but can be used for all such vector-based models. For actually building a vector semantic space, use the package 'lsa' or other specialized software. Downloadable semantic spaces can be found at <https://sites.google.com/site/fritzgntr/software-resources>.
Maintained by Fritz Guenther. Last updated 1 years ago.
1 stars 3.18 score 85 scripts 1 dependents
pettermostad
lestat:A Package for Learning Statistics
Some simple objects and functions to do statistics using linear models and a Bayesian framework.
Maintained by Petter Mostad. Last updated 7 years ago.
2.28 score 64 scripts 1 dependentscran
PerMallows:Permutations and Mallows Distributions
Includes functions to work with the Mallows and Generalized Mallows Models. The considered distances are Kendall's-tau, Cayley, Hamming and Ulam and it includes functions for making inference, sampling and learning such distributions, some of which are novel in the literature. As a by-product, PerMallows also includes operations for permutations, paying special attention to those related with the Kendall's-tau, Cayley, Ulam and Hamming distances. It is also possible to generate random permutations at a given distance, or with a given number of inversions, or cycles, or fixed points or even with a given length on LIS (longest increasing subsequence).
Maintained by Ekhine Irurozki. Last updated 2 months ago.
1 stars 1.00 score
sambaala
acumos:'Acumos' R Interface
Create, upload and run 'Acumos' R models. 'Acumos' (<https://www.acumos.org>) is a platform and open source framework intended to make it easy to build, share, and deploy AI apps. 'Acumos' is part of the 'LF AI Foundation', an umbrella organization within 'The Linux Foundation'. With this package, user can create a component, and push it to an 'Acumos' platform.
Maintained by Alassane Samba. Last updated 4 years ago.
1.00 score 4 scriptscran
kriens:Continuation Passing Style Development
Provides basic functions for Continuation-Passing Style development.
Maintained by Matteo Provenzano. Last updated 9 years ago.
1.00 score