Showing 3 of total 3 results (show query)
bioc
RedeR:Interactive visualization and manipulation of nested networks
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.
Maintained by Mauro Castro. Last updated 5 months ago.
guigraphandnetworknetworknetworkenrichmentnetworkinferencesoftwaresystemsbiology
6.65 score 107 scripts 7 dependents
jakobbossek
grapherator:A Modular Multi-Step Graph Generator
Set of functions for step-wise generation of (weighted) graphs. Aimed for research in the field of single- and multi-objective combinatorial optimization. Graphs are generated adding nodes, edges and weights. Each step may be repeated multiple times with different predefined and custom generators resulting in high flexibility regarding the graph topology and structure of edge weights.
Maintained by Jakob Bossek. Last updated 4 years ago.
combinatorial-optimizationgraph-generatorminimum-spanning-treemulti-objective-optimizationoptimization
9 stars 6.04 score 27 scripts 1 dependentsbioc
pipeFrame:Pipeline framework for bioinformatics in R
pipeFrame is an R package for building a componentized bioinformatics pipeline. Each step in this pipeline is wrapped in the framework, so the connection among steps is created seamlessly and automatically. Users could focus more on fine-tuning arguments rather than spending a lot of time on transforming file format, passing task outputs to task inputs or installing the dependencies. Componentized step elements can be customized into other new pipelines flexibly as well. This pipeline can be split into several important functional steps, so it is much easier for users to understand the complex arguments from each step rather than parameter combination from the whole pipeline. At the same time, componentized pipeline can restart at the breakpoint and avoid rerunning the whole pipeline, which may save a lot of time for users on pipeline tuning or such issues as power off or process other interrupts.
Maintained by Zheng Wei. Last updated 5 months ago.
softwareinfrastructureworkflowstep
1 stars 4.08 score 2 scripts 1 dependents