Showing 6 of total 6 results (show query)
hms-dbmi
UpSetR:A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks (Conway 2017) <doi:10.1093/bioinformatics/btx364>.
Maintained by Jake Conway. Last updated 4 years ago.
gehlenborglabggplot2upsetupsetrvisualization
781 stars 15.33 score 4.8k scripts 42 dependents
gaospecial
ggVennDiagram:A 'ggplot2' Implement of Venn Diagram
Easy-to-use functions to generate 2-7 sets Venn or upset plot in publication quality. 'ggVennDiagram' plot Venn or upset using well-defined geometry dataset and 'ggplot2'. The shapes of 2-4 sets Venn use circles and ellipses, while the shapes of 4-7 sets Venn use irregular polygons (4 has both forms), which are developed and imported from another package 'venn', authored by Adrian Dusa. We provided internal functions to integrate shape data with user provided sets data, and calculated the geometry of every regions/intersections of them, then separately plot Venn in four components, set edges/labels, and region edges/labels. From version 1.0, it is possible to customize these components as you demand in ordinary 'ggplot2' grammar. From version 1.4.4, it supports unlimited number of sets, as it can draw a plain upset plot automatically when number of sets is more than 7.
Maintained by Chun-Hui Gao. Last updated 5 months ago.
set-operationsupsetupsetplotvenn-diagramvenn-plot
292 stars 12.31 score 1.3k scripts 4 dependents
const-ae
ggupset:Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots
Replace the standard x-axis in 'ggplots' with a combination matrix to visualize complex set overlaps. 'UpSet' has introduced a new way to visualize the overlap of sets as an alternative to Venn diagrams. This package provides a simple way to produce such plots using 'ggplot2'. In addition it can convert any categorical axis into a combination matrix axis.
Maintained by Constantin Ahlmann-Eltze. Last updated 2 months ago.
360 stars 10.25 score 524 scripts 6 dependents
krassowski
ComplexUpset:Create Complex UpSet Plots Using 'ggplot2' Components
UpSet plots are an improvement over Venn Diagram for set overlap visualizations. Striving to bring the best of the 'UpSetR' and 'ggplot2', this package offers a way to create complex overlap visualisations, using simple and familiar tools, i.e. geoms of 'ggplot2'. For introduction to UpSet concept, see Lex et al. (2014) <doi:10.1109/TVCG.2014.2346248>.
Maintained by Michał Krassowski. Last updated 1 years ago.
ggplotggplot2patchworkpythonrstatupsetupsetrvennvenn-diagramvisualization
491 stars 9.54 score 554 scripts 4 dependents
yunuuuu
ggalign:A 'ggplot2' Extension for Consistent Axis Alignment
A 'ggplot2' extension offers various tools the creation of complex, multi-plot visualizations. Built on the familiar grammar of graphics, it provides intuitive tools to align and organize plots, making it ideal for complex visualizations. It excels in multi-omics research—such as genomics and microbiomes—by simplifying the visualization of intricate relationships between datasets, for example, linking genes to pathways. Whether you need to stack plots, arrange them around a central figure, or create a circular layout, 'ggalign' delivers flexibility and accuracy with minimal effort.
Maintained by Yun Peng. Last updated 13 days ago.
complex-heatmapsdendrogramdendrogram-heatmapggplotggplot-extensionggplot2heatmapheatmap-visualizationheatmapsmarginal-plotsoncoplotoncoprinttanglegramupsetupsetplot
267 stars 7.08 score 27 scripts
upsetjs
upsetjs:'HTMLWidget' Wrapper of 'UpSet.js' for Exploring Large Set Intersections
'UpSet.js' is a re-implementation of 'UpSetR' to create interactive set visualizations for more than three sets. This is a 'htmlwidget' wrapper around the 'JavaScript' library 'UpSet.js'.
Maintained by Samuel Gratzl. Last updated 3 years ago.
eulereuler-diagramhtmlwidgetinteractiveshinyupsetupsetjsupsetrvennvenn-diagram
36 stars 4.80 score 35 scripts