Showing 5 of total 5 results (show query)
olink-proteomics
OlinkAnalyze:Facilitate Analysis of Proteomic Data from Olink
A collection of functions to facilitate analysis of proteomic data from Olink, primarily NPX data that has been exported from Olink Software. The functions also work on QUANT data from Olink by log- transforming the QUANT data. The functions are focused on reading data, facilitating data wrangling and quality control analysis, performing statistical analysis and generating figures to visualize the results of the statistical analysis. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
Maintained by Kathleen Nevola. Last updated 1 months ago.
olinkproteomicsproteomics-data-analysis
107 stars 9.67 score 61 scripts
somalogic
SomaDataIO:Input/Output 'SomaScan' Data
Load and export 'SomaScan' data via the 'Standard BioTools, Inc.' structured text file called an ADAT ('*.adat'). For file format see <https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>. The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
Maintained by Caleb Scheidel. Last updated 2 months ago.
adatproteomicsproteomics-data-analysissomascan
26 stars 7.71 score 132 scripts
bioc
mspms:Tools for the analysis of MSP-MS data
This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.
Maintained by Charlie Bayne. Last updated 4 months ago.
proteomicsmassspectrometrypreprocessingproteaseproteomics-data-analysis
4.95 score 4 scripts
benbruyneel
proteinDiscover:ProteinDiscover
Provides an interface to the data contained in Proteome Discoverer (Thermo Scientific) results.
Maintained by Ben Bruyneel. Last updated 1 years ago.
mass-spectrometryproteomicsproteomics-data-analysis
2 stars 3.00 score 2 scriptsbenbruyneel
proteinAnnotation:ProteinAnnotation
Display protein information.
Maintained by Ben Bruyneel. Last updated 1 years ago.
mass-spectrometryproteomicsproteomics-data-analysis
1.70 score 1 scripts