Showing 2 of total 2 results (show query)
gtonkinhill
rhierbaps:Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Implements the hierarchical Bayesian analysis of populations structure (hierBAPS) algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences from multiple sequence alignments in FASTA format. The implementation includes improved defaults and plotting capabilities and unlike the original 'MATLAB' version removes singleton SNPs by default.
Maintained by Gerry Tonkin-Hill. Last updated 4 years ago.
population-geneticspopulation-genomicspopulation-structure
34 stars 5.66 score 27 scripts
tom-jenkins
mapmixture:Spatial Visualisation of Admixture on a Projected Map
Visualise admixture as pie charts on a projected map, admixture as traditional structure barplots or facet barplots, and scatter plots from genotype principal components analysis. A 'shiny' app allows users to create admixture maps interactively. Jenkins TL (2024) <doi:10.1111/1755-0998.13943>.
Maintained by Tom Jenkins. Last updated 2 months ago.
admixtureancestrymapmixturepopulation-structureshiny
42 stars 5.58 score 13 scripts