Showing 4 of total 4 results (show query)
epiverse-trace
linelist:Tagging and Validating Epidemiological Data
Provides tools to help storing and handling case line list data. The 'linelist' class adds a tagging system to classical 'data.frame' objects to identify key epidemiological data such as dates of symptom onset, epidemiological case definition, age, gender or disease outcome. Once tagged, these variables can be seamlessly used in downstream analyses, making data pipelines more robust and reliable.
Maintained by Hugo Gruson. Last updated 3 days ago.
datadata-structuresepidemiologyepiverseoutbreakssdg-3structured-data
7 stars 8.69 score 61 scripts 2 dependentsepiverse-trace
simulist:Simulate Disease Outbreak Line List and Contacts Data
Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age-structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.
Maintained by Joshua W. Lambert. Last updated 3 days ago.
epidemiologyepiverselinelistoutbreaks
8 stars 7.79 score 27 scripts
biostats-dev
ggsurveillance:Tools for Outbreak Investigation/Infectious Disease Surveillance
Create epicurves or epigantt charts in 'ggplot2'. Prepare data for visualisation or other reporting for infectious disease surveillance and outbreak investigation. Includes tidy functions to solve date based transformations for common reporting tasks, like (A) seasonal date alignment for respiratory disease surveillance, (B) date-based case binning based on specified time intervals like isoweek, epiweek, month and more, (C) automated detection and marking of the new year based on the date/datetime axis of the 'ggplot2'. An introduction on how to use epicurves can be found on the US CDC website (2012, <https://www.cdc.gov/training/quicklearns/epimode/index.html>).
Maintained by Alexander Bartel. Last updated 28 days ago.
epidemiologyinfectious-disease-surveillanceinfectious-diseasesoutbreaks
2 stars 5.31 score
r4epi
sitrep:Report templates and helper functions for applied epidemiology
Report templates and helper functions for applied epidemiology.
Maintained by Alexander Spina. Last updated 23 days ago.
epidemiologymsfoutbreaksreport-generator
41 stars 4.46 score 9 scripts