Showing 4 of total 4 results (show query)
reconhub
incidence:Compute, Handle, Plot and Model Incidence of Dated Events
Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Maintained by Tim Taylor. Last updated 8 months ago.
58 stars 12.06 score 504 scripts 11 dependentsreconhub
epicontacts:Handling, Visualisation and Analysis of Epidemiological Contacts
A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.
Maintained by Finlay Campbell. Last updated 2 months ago.
15 stars 8.68 score 112 scripts 2 dependentsreconhub
epiflows:Predicting Disease Spread from Flow Data
Provides functions and classes designed to handle and visualise epidemiological flows between locations. Also contains a statistical method for predicting disease spread from flow data initially described in Dorigatti et al. (2017) <doi:10.2807/1560-7917.ES.2017.22.28.30572>. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Maintained by Pawel Piatkowski. Last updated 2 years ago.
18 stars 6.16 score 20 scripts
chguiterman
dfoliatR:Detection and Analysis of Insect Defoliation Signals in Tree Rings
Tools to identify, quantify, analyze, and visualize growth suppression events in tree rings that are often produced by insect defoliation. Described in Guiterman et al. (2020) <doi:10.1016/j.dendro.2020.125750>.
Maintained by Chris Guiterman. Last updated 2 years ago.
budwormdefoliatorsdendrochronologydendroecologydisturbanceforestsinsectsoutbreaktree-rings
7 stars 4.89 score 22 scripts