Showing 10 of total 10 results (show query)
neuropsychology
psycho:Efficient and Publishing-Oriented Workflow for Psychological Science
The main goal of the psycho package is to provide tools for psychologists, neuropsychologists and neuroscientists, to facilitate and speed up the time spent on data analysis. It aims at supporting best practices and tools to format the output of statistical methods to directly paste them into a manuscript, ensuring statistical reporting standardization and conformity.
Maintained by Dominique Makowski. Last updated 4 years ago.
apaapa6bayesiancorrelationformatinterpretationmixed-modelsneurosciencepsychopsychologyrstanarmstatistics
149 stars 10.86 score 628 scripts 5 dependents
natverse
nat:NeuroAnatomy Toolbox for Analysis of 3D Image Data
NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).
Maintained by Gregory Jefferis. Last updated 6 months ago.
3dconnectomicsimage-analysisneuroanatomyneuroanatomy-toolboxneuronneuron-morphologyneurosciencevisualisation
67 stars 9.94 score 436 scripts 2 dependents
cwatson
brainGraph:Graph Theory Analysis of Brain MRI Data
A set of tools for performing graph theory analysis of brain MRI data. It works with data from a Freesurfer analysis (cortical thickness, volumes, local gyrification index, surface area), diffusion tensor tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from DPABI). It contains a graphical user interface for graph visualization and data exploration, along with several functions for generating useful figures.
Maintained by Christopher G. Watson. Last updated 1 years ago.
brain-connectivitybrain-imagingcomplex-networksconnectomeconnectomicsfmrigraph-theorymrinetwork-analysisneuroimagingneurosciencestatisticstractography
188 stars 7.86 score 107 scripts 3 dependents
dipterix
ieegio:File IO for Intracranial Electroencephalography
Integrated toolbox supporting common file formats used for intracranial Electroencephalography (iEEG) and deep-brain stimulation (DBS) study.
Maintained by Zhengjia Wang. Last updated 10 days ago.
bci2000brainbrainvisiondbsedfelectrophysiologyephysfreesurferieegneuroimagingneuroscienceniftinwb-format
5.68 score 10 scripts 1 dependents
roaldarbol
animovement:An R toolbox for analysing animal movement across space and time
An R toolbox for analysing animal movement across space and time.
Maintained by Mikkel Roald-Arbøl. Last updated 3 months ago.
animal-behaviouranimal-movementneuroethologyneuroscience
10 stars 4.81 score 8 scripts
ropensci
tacmagic:Positron Emission Tomography Time-Activity Curve Analysis
To facilitate the analysis of positron emission tomography (PET) time activity curve (TAC) data, and to encourage open science and replicability, this package supports data loading and analysis of multiple TAC file formats. Functions are available to analyze loaded TAC data for individual participants or in batches. Major functionality includes weighted TAC merging by region of interest (ROI), calculating models including standardized uptake value ratio (SUVR) and distribution volume ratio (DVR, Logan et al. 1996 <doi:10.1097/00004647-199609000-00008>), basic plotting functions and calculation of cut-off values (Aizenstein et al. 2008 <doi:10.1001/archneur.65.11.1509>). Please see the walkthrough vignette for a detailed overview of 'tacmagic' functions.
Maintained by Eric Brown. Last updated 5 years ago.
mrineuroimagingneuroscienceneuroscience-methodspetpet-mrpositronpositron-emission-tomographystatistics
5 stars 4.76 score 23 scripts
rethomics
sleepr:Analyse Activity and Sleep Behaviour
Use behavioural variables to score activity and infer sleep from bouts of immobility. It is primarily designed to score sleep in fruit flies from Drosophila Activity Monitor (TriKinetics) and Ethoscope data. It implements sleep scoring using the "five-minute rule" (Hendricks et al. (2000) <DOI:10.1016/S0896-6273(00)80877-6>), activity classification for Ethoscopes (Geissmann et al. (2017) <DOI:10.1371/journal.pbio.2003026>) and a new algorithm to detect when animals are dead.
Maintained by Quentin Geissmann. Last updated 3 years ago.
biological-data-analysisneuroscience
6 stars 4.27 score 62 scripts
agdamsbo
stRoke:Clinical Stroke Research
A collection of tools for clinical trial data management and analysis in research and teaching. The package is mainly collected for personal use, but any use beyond that is encouraged. This package has migrated functions from 'agdamsbo/daDoctoR', and new functions has been added. Version follows months and year. See NEWS/Changelog for release notes. This package includes sampled data from the TALOS trial (Kraglund et al (2018) <doi:10.1161/STROKEAHA.117.020067>). The win_prob() function is based on work by Zou et al (2022) <doi:10.1161/STROKEAHA.121.037744>. The age_calc() function is based on work by Becker (2020) <doi:10.18637/jss.v093.i02>.
Maintained by Andreas Gammelgaard Damsbo. Last updated 5 months ago.
4.18 score 7 scripts
jewellsean
LZeroSpikeInference:Exact Spike Train Inference via L0 Optimization
An implementation of algorithms described in Jewell and Witten (2017) <arXiv:1703.08644>.
Maintained by Sean Jewell. Last updated 6 years ago.
changepointdynamic-programminglassoneurosciencestatistics
8 stars 3.60 score 8 scripts
javzapata
fgm:Partial Separability and Functional Graphical Models for Multivariate Gaussian Processes
Estimates a functional graphical model and a partially separable KL decomposition for a multivariate Gaussian process.
Maintained by Javier Zapata. Last updated 4 years ago.
covariance-estimationfunctional-data-analysisgaussian-processesgraphical-modelskarhunen-loeveneuroimaging-dataneuroscience
4 stars 3.30 score 8 scripts