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cogdisreslab
drugfindR:Investigate iLINCS for candidate repurposable drugs
This package provides a convenient way to access the LINCS Signatures available in the iLINCS database. These signatures include Consensus Gene Knockdown Signatures, Gene Overexpression signatures and Chemical Perturbagen Signatures. It also provides a way to enter your own transcriptomic signatures and identify concordant and discordant signatures in the LINCS database.
Maintained by Ali Sajid Imami. Last updated 9 days ago.
lincsilincsdrug repurposingdrug discoverytranscriptomicsgene expressiongene knockdowngene overexpressionchemical perturbagendrugfindrbioinformaticsbioinformatics-pipeline
8 stars 6.19 score 145 scriptscogdisreslab
BioPathNet:BioPathNet: Three Pod Analysis System
This package aims to provide a simple interface to perform the Three Pod Analysis of RNASeq dataaset. In addition, this also provides utility functions to perform the individual components.
Maintained by Ali Sajid Imami. Last updated 2 years ago.
bioinformaticsbioinformatics-pipelineilincstranscriptomics
2 stars 2.00 score 5 scripts