R-universe search: topic:ecosystem-science

pecanproject

PEcAn.DB:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by David LeBauer. Last updated 1 days ago.

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216 stars 11.90 score 127 scripts 27 dependents

pecanproject

PEcAn.data.atmosphere:PEcAn Functions Used for Managing Climate Driver Data

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The PECAn.data.atmosphere package converts climate driver data into a standard format for models integrated into PEcAn. As a standalone package, it provides an interface to access diverse climate data sets.

Maintained by David LeBauer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 11.62 score 64 scripts 14 dependents

pecanproject

PEcAn.visualization:PEcAn visualization functions

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This module is used to create more complex visualizations from the data generated by PEcAn code, specifically the models.

Maintained by David LeBauer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 10.97 score 74 scripts 11 dependents

pecanproject

PEcAn.utils:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by Rob Kooper. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 10.94 score 218 scripts 35 dependents

pecanproject

PEcAn.benchmark:PEcAn Functions Used for Benchmarking

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.benchmark package provides utilities for comparing models and data, including a suite of statistical metrics and plots.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 10.72 score 416 scripts 11 dependents

pecanproject

PEcAn.settings:PEcAn Settings package

Contains functions to read PEcAn settings files.

Maintained by David LeBauer. Last updated 1 days ago.

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216 stars 10.02 score 54 scripts 17 dependents

pecanproject

PEcAn.assim.batch:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by Istem Fer. Last updated 1 days ago.

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216 stars 9.96 score 20 scripts 2 dependents

pecanproject

PEcAn.priors:PEcAn Functions Used to Estimate Priors from Data

Functions to estimate priors from data.

Maintained by David LeBauer. Last updated 1 days ago.

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216 stars 9.95 score 13 scripts 6 dependents

pecanproject

PEcAn.MA:PEcAn Functions Used for Meta-Analysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.MA package contains the functions used in the Bayesian meta-analysis of trait data.

Maintained by David LeBauer. Last updated 1 days ago.

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216 stars 9.91 score 7 scripts 7 dependents

pecanproject

PEcAnRTM:PEcAn Functions Used for Radiative Transfer Modeling

Functions for performing forward runs and inversions of radiative transfer models (RTMs). Inversions can be performed using maximum likelihood, or more complex hierarchical Bayesian methods. Underlying numerical analyses are optimized for speed using Fortran code.

Maintained by Alexey Shiklomanov. Last updated 1 days ago.

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216 stars 9.70 score 132 scripts

pecanproject

PEcAn.remote:PEcAn Model Execution Utilities

This package contains utilities for communicating with and executing code on local and remote hosts. In particular, it has PEcAn-specific utilities for starting ecosystem model runs.

Maintained by Rob Kooper. Last updated 1 days ago.

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216 stars 9.68 score 13 scripts 32 dependents

pecanproject

PEcAn.logger:Logger Functions for 'PEcAn'

Convenience functions for logging outputs from 'PEcAn', the Predictive Ecosystem Analyzer (LeBauer et al. 2017) <doi:10.1890/12-0137.1>. Enables the user to set what level of messages are printed, as well as whether these messages are written to the console, a file, or both. It also allows control over whether severe errors should stop execution of the 'PEcAn' workflow; this allows strictness when debugging and lenience when running large batches of simulations that should not be terminated by errors in individual models. It is loosely based on the 'log4j' package.

Maintained by Rob Kooper. Last updated 1 days ago.

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216 stars 9.66 score 7 scripts 40 dependents

pecanproject

PEcAn.data.land:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by Mike Dietze. Last updated 1 days ago.

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216 stars 9.34 score 19 scripts 10 dependents

pecanproject

PEcAn.allometry:PEcAn Allometry Functions

Synthesize allometric equations or fit allometries to data.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 9.12 score 34 scripts

pecanproject

PEcAn.qaqc:QAQC

PEcAn integration and model skill testing

Maintained by David LeBauer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 9.06 score 5 scripts

pecanproject

PEcAn.all:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by David LeBauer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 9.01 score 266 scripts

pecanproject

PEcAn.MAAT:PEcAn Package for Integration of the MAAT Model

This module provides functions to wrap the MAAT model into the PEcAn workflows.

Maintained by Shawn Serbin. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 8.96 score 12 scripts

pecanproject

PEcAn.BIOCRO:PEcAn Package for Integration of the BioCro Model

This module provides functions to link BioCro to PEcAn.

Maintained by David LeBauer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 8.95 score 23 scripts

pecanproject

PEcAn.uncertainty:PEcAn Functions Used for Propagating and Partitioning Uncertainties in Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by David LeBauer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 8.94 score 15 scripts 5 dependents

pecanproject

PEcAn.photosynthesis:PEcAn functions used for leaf-level photosynthesis calculations

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. The PEcAn.photosynthesis package contains functions used in the Hierarchical Bayesian calibration of the Farquhar et al 1980 model.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 8.86 score 19 scripts

pecanproject

PEcAn.workflow:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PEcAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides workhorse functions that can be used to run the major steps of a PEcAn analysis.

Maintained by David LeBauer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 8.84 score 15 scripts 4 dependents

pecanproject

PEcAn.emulator:Gausian Process Emulator

Implementation of a Gaussian Process model (both likelihood and bayesian approaches) for kriging and model emulation. Includes functions for sampling design and prediction.

Maintained by Mike Dietze. Last updated 1 days ago.

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216 stars 8.84 score 1 scripts 6 dependents

pecanproject

PEcAn.data.remote:PEcAn Functions Used for Extracting Remote Sensing Data

PEcAn module for processing remote data. Python module requirements: requests, json, re, ast, panads, sys. If any of these modules are missing, install using pip install <module name>.

Maintained by Bailey Morrison. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 8.76 score 6 scripts 5 dependents

pecanproject

PEcAn.ED2:PEcAn Package for Integration of ED2 Model

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Ecosystem Demography Model, version 2, to PEcAn.

Maintained by Mike Dietze. Last updated 1 days ago.

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216 stars 8.74 score 145 scripts

pecanproject

PEcAn.SIPNET:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 8.37 score 61 scripts

pecanproject

PEcAn.LINKAGES:PEcAn Package for Integration of the LINKAGES Model

This module provides functions to link the (LINKAGES) to PEcAn.

Maintained by Ann Raiho. Last updated 1 days ago.

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216 stars 8.35 score 59 scripts

pecanproject

PEcAnAssimSequential:PEcAn Functions Used for Ecological Forecasts and Reanalysis

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 8.13 score 35 scripts

pecanproject

PEcAn.CABLE:PEcAn package for integration of the CABLE model

This module provides functions to link the (CABLE) to PEcAn.

Maintained by Tony Gardella. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score

pecanproject

PEcAn.CLM45:PEcAn Package for Integration of CLM4.5 Model

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the Community Land Model, version 4.5, to PEcAn.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 1 scripts

pecanproject

PEcAn.DALEC:PEcAn Package for Integration of the DALEC Model

This module provides functions to link DALEC to PEcAn.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 8 scripts

pecanproject

PEcAn.PRELES:PEcAn Package for Integration of the PRELES Model

This module provides functions to run the PREdict Light use efficiency Evapotranspiration and Soil moisture (PRELES) model on the PEcAn project. The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool designed to simplify the management of model parameterization,execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.

Maintained by Tony Gardella. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 4 scripts

pecanproject

PEcAn.data.mining:PEcAn Functions Used for Exploring Model Residuals and Structures

(Temporary description) PEcAn functions used for exploring model residuals and structures.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 1 scripts

pecanproject

PEcAn.dvmdostem:PEcAn Package for Integration of the Dvmdostem Model

This module provides functions to link the dvmdostem model to PEcAn.

Maintained by Tobey Carman. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 3 scripts

pecanproject

PEcAn.STICS:PEcAn Package for Integration of the STICS Model

This module provides functions to link the STICS to PEcAn.

Maintained by Istem Fer. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score

pecanproject

PEcAn.ModelName:PEcAn Package for Integration of the ModelName Model

This module provides functions to link the (ModelName) to PEcAn.

Maintained by Jane Doe. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score

pecanproject

PEcAn.MAESPA:PEcAn Functions Used for Ecological Forecasts and Reanalysis using MAESPA

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation.This package allows for MAESPA to be run through the PEcAN workflow.

Maintained by Tony Gardella. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 2 scripts

pecanproject

PEcAn.LDNDC:PEcAn package for integration of the LDNDC model

This module provides functions to link the (LDNDC) to PEcAn.

Maintained by Henri Kajasilta. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants jags cpp

216 stars 7.58 score

pecanproject

PEcAn.SIBCASA:PEcAn Package for Integration of the SiBCASA Model

This module provides functions to link (SiBCASA) to PEcAn. It is a work in progress and is not yet fully functional.

Maintained by Rob Kooper. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score

pecanproject

PEcAn.LPJGUESS:PEcAn Package for Integration of the LPJ-GUESS Model

This module provides functions to link LPJ-GUESS to PEcAn.

Maintained by Istem Fer. Last updated 1 days ago.

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216 stars 7.58 score 1 scripts

pecanproject

PEcAn.JULES:PEcAn Package for Integration of the JULES Model

This module provides functions to link the (JULES) to PEcAn.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score

pecanproject

PEcAn.GDAY:PEcAn Package for Integration of the GDAY Model

This module provides functions to link the GDAY model to PEcAn.

Maintained by Martin De Kauwe. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 1 scripts

pecanproject

PEcAn.BASGRA:PEcAn Package for Integration of the BASGRA Model

This module provides functions to link the BASGRA model to PEcAn.

Maintained by Istem Fer. Last updated 1 days ago.

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216 stars 7.58 score 1 scripts

pecanproject

PEcAn.FATES:PEcAn Package for Integration of FATES Model

The Predictive Ecosystem Carbon Analyzer (PEcAn) is a scientific workflow management tool that is designed to simplify the management of model parameterization, execution, and analysis. The goal of PECAn is to streamline the interaction between data and models, and to improve the efficacy of scientific investigation. This package provides functions to link the FATES model to PEcAn.

Maintained by Mike Dietze. Last updated 1 days ago.

bayesian cyberinfrastructure data-assimilation data-science ecosystem-model ecosystem-science forecasting meta-analysis national-science-foundation pecan plants

216 stars 7.58 score 6 scripts