Showing 3 of total 3 results (show query)
bioc
EnrichDO:a Global Weighted Model for Disease Ontology Enrichment Analysis
To implement disease ontology (DO) enrichment analysis, this package is designed and presents a double weighted model based on the latest annotations of the human genome with DO terms, by integrating the DO graph topology on a global scale. This package exhibits high accuracy that it can identify more specific DO terms, which alleviates the over enriched problem. The package includes various statistical models and visualization schemes for discovering the associations between genes and diseases from biological big data.
Maintained by Hongyu Fu. Last updated 4 months ago.
annotationvisualizationgenesetenrichmentsoftware
4.74 score 9 scriptsbioc
SIMAT:GC-SIM-MS data processing and alaysis tool
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Maintained by M. R. Nezami Ranjbar. Last updated 5 months ago.
immunooncologysoftwaremetabolomicsmassspectrometry
4.26 score 1 scripts
magnusdv
KLINK:Kinship Analysis with Linked Markers
A 'shiny' application for forensic kinship testing, based on the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R) software 'Familias' and 'FamLink', but offers several unique features, including visualisations and automated report generation. The calculation of likelihood ratios supports pairs of linked markers, and all common mutation models.
Maintained by Magnus Dehli Vigeland. Last updated 22 days ago.
forensic-geneticskinship-testingpedsuiteshiny
1 stars 3.88 score 5 scripts