Showing 4 of total 4 results (show query)
bioc
rtracklayer:R interface to genome annotation files and the UCSC genome browser
Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.
Maintained by Michael Lawrence. Last updated 4 days ago.
annotationvisualizationdataimportzlibopensslcurl
12.66 score 6.7k scripts 480 dependents
grunwaldlab
poppr:Genetic Analysis of Populations with Mixed Reproduction
Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Grünwald (2014) <doi:10.7717/peerj.281> with version 2.0 described in Kamvar, Brooks, and Grünwald (2015) <doi:10.3389/fgene.2015.00208>.
Maintained by Zhian N. Kamvar. Last updated 11 months ago.
clonalitygenetic-analysisgenetic-distancesminimum-spanning-networksmultilocus-genotypesmultilocus-lineagespopulation-geneticspopulationsopenmp
69 stars 10.84 score 672 scripts
gwidgets3
gWidgets2:Rewrite of gWidgets API for Simplified GUI Construction
Re-implementation of the 'gWidgets' API. The API is defined in this package. A second, toolkit-specific package is required to use it. At this point only 'gWidgets2tcltk' is viable.
Maintained by John Verzani. Last updated 3 years ago.
3 stars 6.00 score 78 scripts 9 dependents
lbbe-software
MareyMap:Estimation of Meiotic Recombination Rates Using Marey Maps
Local recombination rates are graphically estimated across a genome using Marey maps.
Maintained by Aurélie Siberchicot. Last updated 27 days ago.
1 stars 5.30 score 20 scripts