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bioc
GWASTools:Tools for Genome Wide Association Studies
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.
Maintained by Stephanie M. Gogarten. Last updated 14 days ago.
snpgeneticvariabilityqualitycontrolmicroarray
17 stars 10.67 score 396 scripts 5 dependentsbioc
UPDhmm:Detecting Uniparental Disomy through NGS trio data
Uniparental disomy (UPD) is a genetic condition where an individual inherits both copies of a chromosome or part of it from one parent, rather than one copy from each parent. This package contains a HMM for detecting UPDs through HTS (High Throughput Sequencing) data from trio assays. By analyzing the genotypes in the trio, the model infers a hidden state (normal, father isodisomy, mother isodisomy, father heterodisomy and mother heterodisomy).
Maintained by Marta Sevilla. Last updated 5 months ago.
softwarehiddenmarkovmodelgenetics
1 stars 4.54 score 3 scripts