Showing 3 of total 3 results (show query)
openair-project
openair:Tools for the Analysis of Air Pollution Data
Tools to analyse, interpret and understand air pollution data. Data are typically regular time series and air quality measurement, meteorological data and dispersion model output can be analysed. The package is described in Carslaw and Ropkins (2012, <doi:10.1016/j.envsoft.2011.09.008>) and subsequent papers.
Maintained by David Carslaw. Last updated 21 hours ago.
air-qualityair-quality-datameteorologyopenaircpp
316 stars 12.93 score 1.2k scripts 12 dependents
bioc
CGHbase:CGHbase: Base functions and classes for arrayCGH data analysis.
Contains functions and classes that are needed by arrayCGH packages.
Maintained by Mark van de Wiel. Last updated 5 months ago.
infrastructuremicroarraycopynumbervariation
3.98 score 3 scripts 8 dependents
z0on
MCMC.qpcr:Bayesian Analysis of qRT-PCR Data
Quantitative RT-PCR data are analyzed using generalized linear mixed models based on lognormal-Poisson error distribution, fitted using MCMC. Control genes are not required but can be incorporated as Bayesian priors or, when template abundances correlate with conditions, as trackers of global effects (common to all genes). The package also implements a lognormal model for higher-abundance data and a "classic" model involving multi-gene normalization on a by-sample basis. Several plotting functions are included to extract and visualize results. The detailed tutorial is available here: <https://matzlab.weebly.com/uploads/7/6/2/2/76229469/mcmc.qpcr.tutorial.v1.2.4.pdf>.
Maintained by Mikhail V. Matz. Last updated 5 years ago.
2 stars 1.85 score 35 scripts