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cpanse
protViz:Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Helps with quality checks, visualizations and analysis of mass spectrometry data, coming from proteomics experiments. The package is developed, tested and used at the Functional Genomics Center Zurich <https://fgcz.ch>. We use this package mainly for prototyping, teaching, and having fun with proteomics data. But it can also be used to do data analysis for small scale data sets.
Maintained by Christian Panse. Last updated 1 years ago.
funmass-spectrometrypeptide-identificationproteomicsquantificationvisualizationcpp
11 stars 7.88 score 72 scripts 2 dependents
bioc
specL:specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics
provides a functions for generating spectra libraries that can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software. The package is developed, tested and used at the Functional Genomics Center Zurich <https://fgcz.ch>.
Maintained by Christian Panse. Last updated 5 months ago.
massspectrometryproteomicsddadiamass-spectrometry
1 stars 5.46 score 12 scripts