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Spectra:Spectra Infrastructure for Mass Spectrometry Data
The Spectra package defines an efficient infrastructure for storing and handling mass spectrometry spectra and functionality to subset, process, visualize and compare spectra data. It provides different implementations (backends) to store mass spectrometry data. These comprise backends tuned for fast data access and processing and backends for very large data sets ensuring a small memory footprint.
Maintained by RforMassSpectrometry Package Maintainer. Last updated 25 days ago.
infrastructureproteomicsmassspectrometrymetabolomicsbioconductorhacktoberfestmass-spectrometry
41 stars 13.01 score 254 scripts 35 dependentsbioc
MsBackendMgf:Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.
Maintained by RforMassSpectrometry Package Maintainer. Last updated 3 months ago.
infrastructureproteomicsmassspectrometrymetabolomicsdataimport
5 stars 7.20 score 35 scripts 4 dependentsbioc
MsBackendMsp:Mass Spectrometry Data Backend for NIST msp Files
Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.
Maintained by Johannes Rainer. Last updated 3 months ago.
infrastructureproteomicsmassspectrometrymetabolomicsdataimportmass-spectrometry
5 stars 7.12 score 37 scripts 3 dependentsbioc
MsBackendMassbank:Mass Spectrometry Data Backend for MassBank record Files
Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.
Maintained by RforMassSpectrometry Package Maintainer. Last updated 1 months ago.
infrastructuremassspectrometrymetabolomicsdataimportmassbankspectra
3 stars 5.81 score 27 scripts
rformassspectrometry
SpectriPy:Integrating Spectra with Python's matchms
The SpectriPy package allows integration of Python-based MS analysis code with the Spectra package. Spectra objects can be converted into Python's matchms Spectrum objects. In addition, SpectriPy integrates and wraps the similarity scoring and processing/filtering functions from the matchms package into R.
Maintained by Johannes Rainer. Last updated 2 months ago.
infrastructuremetabolomicsmassspectrometrymass-spectrometrypython
8 stars 5.25 score 5 scripts