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bioc
debCAM:Deconvolution by Convex Analysis of Mixtures
An R package for fully unsupervised deconvolution of complex tissues. It provides basic functions to perform unsupervised deconvolution on mixture expression profiles by Convex Analysis of Mixtures (CAM) and some auxiliary functions to help understand the subpopulation-specific results. It also implements functions to perform supervised deconvolution based on prior knowledge of molecular markers, S matrix or A matrix. Combining molecular markers from CAM and from prior knowledge can achieve semi-supervised deconvolution of mixtures.
Maintained by Lulu Chen. Last updated 5 months ago.
softwarecellbiologygeneexpressionopenjdk
7 stars 5.69 score 14 scripts
mjaeugster
archetypes:Archetypal Analysis
The main function archetypes implements a framework for archetypal analysis supporting arbitrary problem solving mechanisms for the different conceptual parts of the algorithm.
Maintained by Manuel J. A. Eugster. Last updated 6 years ago.
3 stars 4.49 score 57 scripts 3 dependents