Showing 4 of total 4 results (show query)
martakarass
adept:Adaptive Empirical Pattern Transformation
Designed for optimal use in performing fast, accurate walking strides segmentation from high-density data collected from a wearable accelerometer worn during continuous walking activity.
Maintained by Marta Karas. Last updated 4 years ago.
7 stars 5.35 score 16 scripts
bioc
sitePath:Phylogeny-based sequence clustering with site polymorphism
Using site polymorphism is one of the ways to cluster DNA/protein sequences but it is possible for the sequences with the same polymorphism on a single site to be genetically distant. This package is aimed at clustering sequences using site polymorphism and their corresponding phylogenetic trees. By considering their location on the tree, only the structurally adjacent sequences will be clustered. However, the adjacent sequences may not necessarily have the same polymorphism. So a branch-and-bound like algorithm is used to minimize the entropy representing the purity of site polymorphism of each cluster.
Maintained by Chengyang Ji. Last updated 5 months ago.
alignmentmultiplesequencealignmentphylogeneticssnpsoftwaremutationcpp
9 stars 5.26 score 9 scripts
fischuu
Fluidigm:Handling Fluidigm Data
Designed to streamline the process of analyzing genotyping data from Fluidigm machines, this package offers a suite of tools for data handling and analysis. It includes functions for converting Fluidigm data to format used by 'PLINK', estimating errors, calculating pairwise similarities, determining pairwise similarity loci, and generating a similarity matrix.
Maintained by Daniel Fischer. Last updated 1 years ago.
1 stars 4.00 scorebioc
LymphoSeq:Analyze high-throughput sequencing of T and B cell receptors
This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay. Its input comes from tab-separated value (.tsv) files exported from the ImmunoSEQ analyzer.
Maintained by David Coffey. Last updated 5 months ago.
softwaretechnologysequencingtargetedresequencingalignmentmultiplesequencealignment
4.00 score 4 scripts