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TFBSTools:Software Package for Transcription Factor Binding Site (TFBS) Analysis
TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.
Maintained by Ge Tan. Last updated 21 days ago.
motifannotationgeneregulationmotifdiscoverytranscriptionalignment
28 stars 12.36 score 1.1k scripts 18 dependentsbioc
seqLogo:Sequence logos for DNA sequence alignments
seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).
Maintained by Robert Ivanek. Last updated 5 months ago.
4 stars 10.57 score 304 scripts 29 dependentsbioc
DiffLogo:DiffLogo: A comparative visualisation of biooligomer motifs
DiffLogo is an easy-to-use tool to visualize motif differences.
Maintained by Hendrik Treutler. Last updated 5 months ago.
softwaresequencematchingmultiplecomparisonmotifannotationvisualizationalignment
8 stars 6.66 score 27 scripts