Showing 3 of total 3 results (show query)
bioc
CEMiTool:Co-expression Modules identification Tool
The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.
Maintained by Helder Nakaya. Last updated 5 months ago.
geneexpressiontranscriptomicsgraphandnetworkmrnamicroarrayrnaseqnetworknetworkenrichmentpathwaysimmunooncology
5.58 score 38 scripts
epiforecasts
forecast.vocs:Forecast Case and Sequence Notifications using Variant of Concern Strain Dynamics
Contains models and tools to produce short-term forecasts for both case and sequence notifications assuming circulation of either one or two variants. Tools are also provided to allow the evaluation of the use of sequence data for short-term forecasts in both real-world settings and in user generated scenarios.
Maintained by Sam Abbott. Last updated 2 years ago.
8 stars 5.25 score 22 scripts
hsci-r
gghsci:HSCI ggplot2 theme
ggplot2 theme used by the Human Sciences -- Computing Interaction research group at the University of Helsinki.
Maintained by Eetu Mäkelä. Last updated 1 years ago.
1.43 score 27 scripts