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bioc
SWATH2stats:Transform and Filter SWATH Data for Statistical Packages
This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.
Maintained by Peter Blattmann. Last updated 5 months ago.
proteomicsannotationexperimentaldesignpreprocessingmassspectrometryimmunooncology
1 stars 6.30 score 22 scriptsbioc
CEMiTool:Co-expression Modules identification Tool
The CEMiTool package unifies the discovery and the analysis of coexpression gene modules in a fully automatic manner, while providing a user-friendly html report with high quality graphs. Our tool evaluates if modules contain genes that are over-represented by specific pathways or that are altered in a specific sample group. Additionally, CEMiTool is able to integrate transcriptomic data with interactome information, identifying the potential hubs on each network.
Maintained by Helder Nakaya. Last updated 5 months ago.
geneexpressiontranscriptomicsgraphandnetworkmrnamicroarrayrnaseqnetworknetworkenrichmentpathwaysimmunooncology
5.58 score 38 scripts