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bioc
treeclimbR:An algorithm to find optimal signal levels in a tree
The arrangement of hypotheses in a hierarchical structure appears in many research fields and often indicates different resolutions at which data can be viewed. This raises the question of which resolution level the signal should best be interpreted on. treeclimbR provides a flexible method to select optimal resolution levels (potentially different levels in different parts of the tree), rather than cutting the tree at an arbitrary level. treeclimbR uses a tuning parameter to generate candidate resolutions and from these selects the optimal one.
Maintained by Charlotte Soneson. Last updated 3 months ago.
statisticalmethodcellbasedassays
20 stars 6.86 score 45 scripts
aurora-torrente
RcmdrPlugin.depthTools:R Commander Depth Tools Plug-in
We provide an Rcmdr plug-in based on the depthTools package, which implements different robust statistical tools for the description and analysis of gene expression data based on the Modified Band Depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods.
Maintained by Aurora Torrente. Last updated 4 years ago.
1.04 score