Showing 1 of total 1 results (show query)
bioc
celda:CEllular Latent Dirichlet Allocation
Celda is a suite of Bayesian hierarchical models for clustering single-cell RNA-sequencing (scRNA-seq) data. It is able to perform "bi-clustering" and simultaneously cluster genes into gene modules and cells into cell subpopulations. It also contains DecontX, a novel Bayesian method to computationally estimate and remove RNA contamination in individual cells without empty droplet information. A variety of scRNA-seq data visualization functions is also included.
Maintained by Joshua Campbell. Last updated 1 months ago.
singlecellgeneexpressionclusteringsequencingbayesianimmunooncologydataimportcppopenmp
147 stars 10.47 score 256 scripts 2 dependents