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sonatype-nexus-community
oysteR:Scans R Projects for Vulnerable Third Party Dependencies
Collects a list of your third party R packages, and scans them with the 'OSS' Index provided by 'Sonatype', reporting back on any vulnerabilities that are found in the third party packages you use.
Maintained by Colin Gillespie. Last updated 4 years ago.
40 stars 6.08 score 6 scripts
bbsbayes
bbsBayes2:Hierarchical Bayesian Analysis of North American BBS Data
The North American Breeding Bird Survey (BBS) is a long-running program that seeks to monitor the status and trends of the breeding birds in North America. Since its start in 1966, the BBS has accumulated over 50 years of data for over 500 species of North American Birds. Given the temporal and spatial structure of the data, hierarchical Bayesian models are used to assess the status and trends of these 500+ species of birds. 'bbsBayes2' allows you to perform hierarchical Bayesian analysis of BBS data. You can run a full model analysis for one or more species that you choose, or you can take more control and specify how the data should be stratified, prepared for 'Stan', or modelled.
Maintained by Brandon P.M. Edwards. Last updated 2 months ago.
8 stars 4.64 score 121 scripts
bioc
fenr:Fast functional enrichment for interactive applications
Perform fast functional enrichment on feature lists (like genes or proteins) using the hypergeometric distribution. Tailored for speed, this package is ideal for interactive platforms such as Shiny. It supports the retrieval of functional data from sources like GO, KEGG, Reactome, Bioplanet and WikiPathways. By downloading and preparing data first, it allows for rapid successive tests on various feature selections without the need for repetitive, time-consuming preparatory steps typical of other packages.
Maintained by Marek Gierlinski. Last updated 1 months ago.
functionalpredictiondifferentialexpressiongenesetenrichmentgokeggreactomeproteomics
4.60 score 4 scripts