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bnprks
BPCells:Single Cell Counts Matrices to PCA
> Efficient operations for single cell ATAC-seq fragments and RNA counts matrices. Interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds.
Maintained by Benjamin Parks. Last updated 2 months ago.
184 stars 7.48 score 172 scripts
bioc
spatialDE:R wrapper for SpatialDE
SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.
Maintained by Gabriele Sales. Last updated 5 months ago.
softwaretranscriptomicspythonspatial-datawrapper
3 stars 4.76 score 16 scripts